Query: NC_011205:25805 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Start: 25805, End: 48315, Length: 22511
Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This is a bovine-adapted serovar that is genetically related to S. Enteritidis that lives in the bovine intestinal tract and can causes disease in humans. While rare in incidence, S. dublin infection classically produces a syndrome of sustained bacteremia with fever, resulting in high morbidity and mortality. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_003197:25803 | 25803 | 48317 | 22515 | Salmonella typhimurium LT2, complete genome | 0 | 26020 | BLASTN svg | BLASTP svg |
NC_011080:25751 | 25751 | 48308 | 22558 | Salmonella enterica subsp. enterica serovar Newport str. SL254, | 0 | 25780 | BLASTN svg | BLASTP svg |
NC_011149:25760 | 25760 | 48314 | 22555 | Salmonella enterica subsp. enterica serovar Agona str. SL483, | 0 | 25440 | BLASTN svg | BLASTP svg |
NC_004631:25807 | 25807 | 48313 | 22507 | Salmonella enterica subsp. enterica serovar Typhi Ty2, complete | 0 | 25370 | BLASTN svg | BLASTP svg |
NC_003198:25807 | 25807 | 48313 | 22507 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 0 | 25360 | BLASTN svg | BLASTP svg |
NC_006511:25796 | 25796 | 48283 | 22488 | Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC | 0 | 25310 | BLASTN svg | BLASTP svg |
NC_010067:2881448 | 2881448 | 2904114 | 22667 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 0 | 14690 | BLASTN svg | BLASTP svg |
NC_010102:25893 | 25893 | 48155 | 22263 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, | 0 | 13370 | BLASTN svg | BLASTP svg |
CU928160:11381* | 11381 | 35950 | 24570 | Escherichia coli IAI1 chromosome, complete genome | 6e-149 | 535 | BLASTN svg | BLASTP svg |
NC_011748:11394* | 11394 | 35962 | 24569 | Escherichia coli 55989, complete genome | 4e-144 | 519 | BLASTN svg | BLASTP svg |
NC_010468:3970995* | 3970995 | 3994063 | 23069 | Escherichia coli ATCC 8739, complete genome | 4e-144 | 519 | BLASTN svg | BLASTP svg |
CU928145:11394* | 11394 | 35962 | 24569 | Escherichia coli 55989 chromosome, complete genome | 4e-144 | 519 | BLASTN svg | BLASTP svg |
CP002516:4081484* | 4081484 | 4104095 | 22612 | Escherichia coli KO11, complete genome | 4e-144 | 519 | BLASTN svg | BLASTP svg |
CP002185:11921* | 11921 | 37229 | 25309 | Escherichia coli W, complete genome | 4e-144 | 519 | BLASTN svg | BLASTP svg |
NC_009800:12162* | 12162 | 37297 | 25136 | Escherichia coli HS, complete genome | 2e-142 | 513 | BLASTN svg | BLASTP svg |
NC_009801:11921* | 11921 | 33994 | 22074 | Escherichia coli E24377A, complete genome | 9e-142 | 511 | BLASTN svg | BLASTP svg |
NC_007384:16500* | 16500 | 41204 | 24705 | Shigella sonnei Ss046, complete genome | 9e-142 | 511 | BLASTN svg | BLASTP svg |
AP010958:12660* | 12660 | 33989 | 21330 | Escherichia coli O103:H2 str. 12009 DNA, complete genome | 9e-142 | 511 | BLASTN svg | BLASTP svg |
NC_011751:12000* | 12000 | 38355 | 26356 | Escherichia coli UMN026 chromosome, complete genome | 1e-140 | 507 | BLASTN svg | BLASTP svg |
NC_011750:12047* | 12047 | 42212 | 30166 | Escherichia coli IAI39 chromosome, complete genome | 1e-140 | 507 | BLASTN svg | BLASTP svg |
NC_002695:12000* | 12000 | 35173 | 23174 | Escherichia coli O157:H7 str. Sakai, complete genome | 3e-138 | 500 | BLASTN svg | BLASTP svg |
NC_002655:12000* | 12000 | 33570 | 21571 | Escherichia coli O157:H7 EDL933, complete genome | 3e-138 | 500 | BLASTN svg | BLASTP svg |
NC_013850:4612812* | 4612812 | 4636499 | 23688 | Klebsiella variicola At-22 chromosome, complete genome | 4e-73 | 283 | BLASTN svg | BLASTP svg |
NC_010159:809663 | 809663 | 832407 | 22745 | Yersinia pestis Angola, complete genome | 1e-32 | 149 | BLASTN svg | BLASTP svg |
NC_008150:4561633* | 4561633 | 4581599 | 19967 | Yersinia pestis Antiqua, complete genome | 1e-32 | 149 | BLASTN svg | BLASTP svg |
NC_008149:402599* | 402599 | 423906 | 21308 | Yersinia pestis Nepal516, complete genome | 1e-32 | 149 | BLASTN svg | BLASTP svg |
NC_006155:713174* | 713174 | 732013 | 18840 | Yersinia pseudotuberculosis IP 32953, complete genome | 1e-32 | 149 | BLASTN svg | BLASTP svg |
NC_003143:483395* | 483395 | 503350 | 19956 | Yersinia pestis CO92, complete genome | 1e-32 | 149 | BLASTN svg | BLASTP svg |
NC_013526:439813 | 439813 | 479608 | 39796 | Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |