Pre_GI: BLASTP Hits

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Query: NC_011205:1345511:1349085 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853

Start: 1349085, End: 1349315, Length: 231

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a bovine-adapted serovar that is genetically related to S. Enteritidis that lives in the bovine intestinal tract and can causes disease in humans. While rare in incidence, S. dublin infection classically produces a syndrome of sustained bacteremia with fever, resulting in high morbidity and mortality. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:1902788:192698519269851927215231Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA polymerase III subunit theta1e-37154
NC_006511:1063249:106682310668231067053231Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCDNA polymerase III, theta subunit1e-37154
NC_003197:1945858:197005419700541970284231Salmonella typhimurium LT2, complete genomeDNA polymerase III theta subunit1e-37154
NC_010102:1137247:114082111408211141051231Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-37154
NC_011080:1944226:197567519756751975905231Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein1e-37154
NC_011083:1993672:201907520190752019305231Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein1e-37154
NC_011094:1923870:194861519486151948845231Salmonella enterica subsp. enterica serovar Schwarzengrund strDNA polymerase III subunit theta1e-37154
NC_011147:1057259:106083310608331061063231Salmonella enterica subsp. enterica serovar Paratyphi A strDNA polymerase III subunit theta1e-37154
NC_011294:1220526:122410012241001224330231Salmonella enterica subsp. enterica serovar Enteritidis strDNA polymerase III subunit theta1e-37154
NC_012125:1897611:190118319011831901413231Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA polymerase III subunit theta1e-37154
NC_016810:1903426:192762219276221927852231Salmonella enterica subsp. enterica serovar Typhimurium strDNA polymerase III subunit theta1e-37154
NC_016856:1957263:198145919814591981689231Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SDNA polymerase III subunit theta1e-37154
NC_016857:1903426:192762219276221927852231Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74DNA polymerase III subunit theta1e-37154
NC_016860:1943203:196559519655951965825231Salmonella enterica subsp. enterica serovar Typhimurium strDNA polymerase III subunit theta1e-37154
NC_016863:1905454:192965019296501929880231Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1DNA polymerase III subunit theta1e-37154
NC_008258:1873805:188960118896011889831231Shigella flexneri 5 str. 8401, complete genomeDNA polymerase III, theta subunit2e-33140
NC_013850:1887556:189114118911411891371231Klebsiella variicola At-22 chromosome, complete genomeDNA polymerase II beta subunit3e-31133
NC_013421:2306000:231350723135072313737231Pectobacterium wasabiae WPP163, complete genomeDNA polymerase II beta subunit2e-25114
NC_016816:2073677:207640420764042076703300Pantoea ananatis LMG 5342, complete genomeDNA polymerase III subunit theta4e-25113
NC_015566:2039431:204417920441792044409231Serratia sp. AS12 chromosome, complete genomeDNA polymerase II subunit beta2e-23107
NC_015567:2039443:204419120441912044421231Serratia sp. AS9 chromosome, complete genomeDNA polymerase II subunit beta2e-23107
NC_015061:3111211:313222231322223132452231Rahnella sp. Y9602 chromosome, complete genomeDNA polymerase II subunit beta2e-23107
NC_010634:2004653:201140720114072011637231Yersinia pseudotuberculosis PB1/+, complete genomeDNA polymerase II beta subunit7e-2199.4
NC_010159:1668795:167816616781661678396231Yersinia pestis Angola, complete genomeDNA polymerase III, theta subunit7e-2199.4
NC_012912:2553391:256507825650782565308231Dickeya zeae Ech1591, complete genomeDNA polymerase II beta subunit3e-2097.1
NC_021066:2226826:223724022372402237497258Raoultella ornithinolytica B6, complete genomeDNA polymerase III subunit theta5e-1683.2
NC_011283:4212000:421421442142144214471258Klebsiella pneumoniae 342 chromosome, complete genomeDNA polymerase III subunit theta4e-1683.2
NC_009832:2211154:223441522344152234675261Serratia proteamaculans 568, complete genomeDNA polymerase II beta subunit7e-1475.9
NC_013850:1887556:189492718949271895124198Klebsiella variicola At-22 chromosome, complete genomeDNA polymerase II beta subunit9e-1475.5
NC_016816:4129299:415676441567644157006243Pantoea ananatis LMG 5342, complete genomeDNA polymerase III subunit theta3e-1270.5
NC_020418:3102460:310756731075673107791225Morganella morganii subsp. morganii KT, complete genomeDNA polymerase III theta subunit1e-1168.2
NC_020181:929000:938898938898939131234Enterobacter aerogenes EA1509E, complete genomeDNA polymerase III theta subunit2e-1168.2
NC_014837:2354241:236494223649422365184243Pantoea sp. At-9b chromosome, complete genomeDNA polymerase II subunit beta1e-1065.1
NC_020064:1150982:116006111600611160282222Serratia marcescens FGI94, complete genomeDNA polymerase III, theta subunit1e-0858.2