Pre_GI: BLASTN Hits

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Query: NC_011149:2912219 Salmonella enterica subsp. enterica serovar Agona str. SL483,

Start: 2912219, End: 2968148, Length: 55930

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003197:3005842*3005842306162755786Salmonella typhimurium LT2, complete genome077060BLASTN svgBLASTP svg
NC_008253:28285732828573285250723935Escherichia coli 536, complete genome01596BLASTN svgBLASTP svg
NC_009801:30138383013838304465430817Escherichia coli E24377A, complete genome01992BLASTN svgBLASTP svg
NC_010067:51000510007450923510Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete06058BLASTN svgBLASTP svg
NC_010067:840938409311334429252Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete08816BLASTN svgBLASTP svg
NC_006905:29878632987863300811020248Salmonella enterica subsp. enterica serovar Choleraesuis str020430BLASTN svgBLASTP svg
NC_004631:28721922872192289431722126Salmonella enterica subsp. enterica serovar Typhi Ty2, complete020470BLASTN svgBLASTP svg
NC_011083:30097603009760303011220353Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,021860BLASTN svgBLASTP svg
NC_004631:28424532842453287123828786Salmonella enterica subsp. enterica serovar Typhi Ty2, complete029030BLASTN svgBLASTP svg
NC_011083:29803562980356299819217837Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,033330BLASTN svgBLASTP svg
NC_003198:28565962856596290597449379Salmonella enterica subsp. enterica serovar Typhi str. CT18,034000BLASTN svgBLASTP svg
NC_006511:28191282819128287100051873Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC034010BLASTN svgBLASTP svg
NC_006905:29602602960260298690926650Salmonella enterica subsp. enterica serovar Choleraesuis str041830BLASTN svgBLASTP svg
NC_010102:29674642967464302271055247Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,067500BLASTN svgBLASTP svg
NC_011080:29823462982346303624053895Salmonella enterica subsp. enterica serovar Newport str. SL254,076980BLASTN svgBLASTP svg
NC_012880:3421500*3421500345764636147Dickeya dadantii Ech703, complete genome1e-124456BLASTN svgBLASTP svg
NC_013961:851044*85104488459933556Erwinia amylovora, complete genome9e-104387BLASTN svgBLASTP svg
NC_004547:1174650*1174650121156236913Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-63252BLASTN svgBLASTP svg
NC_014562:2563466*2563466261248449019Pantoea vagans C9-1 chromosome, complete genome3e-51212BLASTN svgBLASTP svg
NC_013508:16874321687432172109933668Edwardsiella tarda EIB202, complete genome3e-48202BLASTN svgBLASTP svg
NC_010694:2971170*2971170300344632277Erwinia tasmaniensis, complete genome7e-46194BLASTN svgBLASTP svg
NC_012779:12865001286500132459938100Edwardsiella ictaluri 93-146, complete genome7e-46194BLASTN svgBLASTP svg
NC_012779:1449500*1449500150683157332Edwardsiella ictaluri 93-146, complete genome7e-46194BLASTN svgBLASTP svg
NC_012779:19662051966205198609919895Edwardsiella ictaluri 93-146, complete genome7e-46194BLASTN svgBLASTP svg
NC_012779:26198712619871264372223852Edwardsiella ictaluri 93-146, complete genome7e-46194BLASTN svgBLASTP svg
NC_012779:2928000*2928000295428726288Edwardsiella ictaluri 93-146, complete genome7e-46194BLASTN svgBLASTP svg
NC_012779:3176820*3176820323178054961Edwardsiella ictaluri 93-146, complete genome7e-46194BLASTN svgBLASTP svg
NC_012779:34699834699837871931722Edwardsiella ictaluri 93-146, complete genome7e-46194BLASTN svgBLASTP svg
NC_012779:610509*61050963687526367Edwardsiella ictaluri 93-146, complete genome7e-46194BLASTN svgBLASTP svg
NC_012779:91600091600093379317794Edwardsiella ictaluri 93-146, complete genome7e-46194BLASTN svgBLASTP svg
AP010958:36273553627355365976432410Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-45192BLASTN svgBLASTP svg
AP010958:5090696*5090696512565934964Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-45192BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome2e-43186BLASTN svgBLASTP svg
NC_012779:21275422127542216530837767Edwardsiella ictaluri 93-146, complete genome2e-43186BLASTN svgBLASTP svg
NC_012779:21849272184927220656121635Edwardsiella ictaluri 93-146, complete genome2e-43186BLASTN svgBLASTP svg
NC_012779:26648492664849268361918771Edwardsiella ictaluri 93-146, complete genome2e-43186BLASTN svgBLASTP svg
NC_012779:30596930596933285826890Edwardsiella ictaluri 93-146, complete genome2e-43186BLASTN svgBLASTP svg
NC_012779:95755895755898306025503Edwardsiella ictaluri 93-146, complete genome2e-43186BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome2e-43186BLASTN svgBLASTP svg
NC_020064:1409596*1409596145680247207Serratia marcescens FGI94, complete genome2e-40176BLASTN svgBLASTP svg
NC_020064:3998715*3998715409080492090Serratia marcescens FGI94, complete genome2e-40176BLASTN svgBLASTP svg
NC_020064:521500*52150055828736788Serratia marcescens FGI94, complete genome2e-37167BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,6e-37165BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome6e-37165BLASTN svgBLASTP svg
NC_011083:40302240302245026847247Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,6e-34155BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,6e-34155BLASTN svgBLASTP svg
NC_011751:3285646*3285646333126645621Escherichia coli UMN026 chromosome, complete genome4e-32149BLASTN svgBLASTP svg
NC_011149:44740124474012449847024459Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-31147BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-31147BLASTN svgBLASTP svg
NC_010102:44778364477836450325125416Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-31147BLASTN svgBLASTP svg
NC_006905:4486433*4486433450919922767Salmonella enterica subsp. enterica serovar Choleraesuis str1e-31147BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome9e-30141BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome9e-30141BLASTN svgBLASTP svg
NC_008253:12284851228485125292524441Escherichia coli 536, complete genome9e-30141BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome9e-30141BLASTN svgBLASTP svg
NC_010488:48868488687267123804Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence9e-30141BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome9e-30141BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome9e-30141BLASTN svgBLASTP svg
NC_006511:44654954465495449196526471Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-28137BLASTN svgBLASTP svg
NC_004631:4661000*4661000468421223213Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-28137BLASTN svgBLASTP svg
NC_003198:4676536*4676536471603539500Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-28137BLASTN svgBLASTP svg
NC_012214:12126161212616123625023635Erwinia pyrifoliae Ep1/96, complete genome2e-27133BLASTN svgBLASTP svg
NC_012214:13555001355500137677021271Erwinia pyrifoliae Ep1/96, complete genome2e-27133BLASTN svgBLASTP svg
NC_012214:1650523*1650523168104730525Erwinia pyrifoliae Ep1/96, complete genome2e-27133BLASTN svgBLASTP svg
NC_012214:2221702*2221702227363551934Erwinia pyrifoliae Ep1/96, complete genome2e-27133BLASTN svgBLASTP svg
NC_010498:11179381117938114953131594Escherichia coli SMS-3-5, complete genome3e-26129BLASTN svgBLASTP svg
NC_002695:3702344*3702344374703744694Escherichia coli O157:H7 str. Sakai, complete genome3e-26129BLASTN svgBLASTP svg
NC_002655:3769643*3769643381434344701Escherichia coli O157:H7 EDL933, complete genome3e-26129BLASTN svgBLASTP svg
AC_000091:55892055892058720428285Escherichia coli W3110 DNA, complete genome2e-21113BLASTN svgBLASTP svg
NC_000913:558920*55892058509926180Escherichia coli K12, complete genome2e-21113BLASTN svgBLASTP svg
NC_010473:498252*49825252418825937Escherichia coli str. K-12 substr. DH10B, complete genome2e-21113BLASTN svgBLASTP svg
NC_008258:1076922*1076922110024923328Shigella flexneri 5 str. 8401, complete genome8e-21111BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome3e-20109BLASTN svgBLASTP svg
NC_000913:1087062*1087062110699919938Escherichia coli K12, complete genome3e-20109BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome3e-20109BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome3e-20109BLASTN svgBLASTP svg
NC_009801:17566101756610177871522106Escherichia coli E24377A, complete genome3e-20109BLASTN svgBLASTP svg
NC_010468:2809125*2809125282748818364Escherichia coli ATCC 8739, complete genome3e-20109BLASTN svgBLASTP svg
NC_011740:28599332859933288499725065Escherichia fergusonii ATCC 35469, complete genome3e-20109BLASTN svgBLASTP svg
CP002185:2919752*2919752294461024859Escherichia coli W, complete genome1e-19107BLASTN svgBLASTP svg
CP002185:4035502*4035502406409928598Escherichia coli W, complete genome1e-19107BLASTN svgBLASTP svg
CP002516:1165726*1165726119130025575Escherichia coli KO11, complete genome1e-19107BLASTN svgBLASTP svg
CP002516:44744*447447499130248Escherichia coli KO11, complete genome1e-19107BLASTN svgBLASTP svg
CU928159:30700*307004909918400Escherichia coli str. 55989 plasmid 55989p, complete genome1e-19107BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome1e-19107BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome1e-19107BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome1e-19107BLASTN svgBLASTP svg
NC_010468:40594364059436408235622921Escherichia coli ATCC 8739, complete genome1e-19107BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome1e-19107BLASTN svgBLASTP svg
NC_004337:1065609*1065609109071125103Shigella flexneri 2a str. 301, complete genome2e-18103BLASTN svgBLASTP svg
NC_010473:27994827994830350723560Escherichia coli str. K-12 substr. DH10B, complete genome8e-18101BLASTN svgBLASTP svg
NC_000913:303719*30371932647122753Escherichia coli K12, complete genome8e-18101BLASTN svgBLASTP svg
AC_000091:30371930371932647122753Escherichia coli W3110 DNA, complete genome8e-18101BLASTN svgBLASTP svg
NC_014500:1646854*1646854167518028327Dickeya dadantii 3937 chromosome, complete genome3e-1799.6BLASTN svgBLASTP svg
NC_010694:21380002138000218529147292Erwinia tasmaniensis, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_014733:18570201857020189477137752Methylovorus sp. MP688 chromosome, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_013717:572657263053624811Citrobacter rodentium ICC168 plasmid pCROD1, complete sequence1e-1387.7BLASTN svgBLASTP svg
NC_013416:16493*164933535418862Aggregatibacter actinomycetemcomitans D11S-1, complete genome5e-1385.7BLASTN svgBLASTP svg
NC_008253:29650029650032229825799Escherichia coli 536, complete genome5e-1385.7BLASTN svgBLASTP svg
NC_003198:18674561867456189339125936Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1283.8BLASTN svgBLASTP svg
NC_004631:10913031091303111095919657Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1283.8BLASTN svgBLASTP svg
NC_006511:10632491063249108659923351Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-1283.8BLASTN svgBLASTP svg
NC_012779:28560512856051288659930549Edwardsiella ictaluri 93-146, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome7e-1281.8BLASTN svgBLASTP svg
NC_009792:92315592315594824825094Citrobacter koseri ATCC BAA-895, complete genome7e-1281.8BLASTN svgBLASTP svg
NC_013956:46278904627890465524427355Pantoea ananatis LMG 20103 chromosome, complete genome7e-1281.8BLASTN svgBLASTP svg
NC_020181:527592*52759257518147590Enterobacter aerogenes EA1509E, complete genome7e-1281.8BLASTN svgBLASTP svg
NC_011750:49780004978000500028022281Escherichia coli IAI39 chromosome, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_007946:47797454779745482809648352Escherichia coli UTI89, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_002695:17946351794635181624421610Escherichia coli O157:H7 str. Sakai, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_002655:22647732264773228824723475Escherichia coli O157:H7 EDL933, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_006905:1961774*1961774198409922326Salmonella enterica subsp. enterica serovar Choleraesuis str4e-1075.8BLASTN svgBLASTP svg
NC_007712:1893066*1893066191459921534Sodalis glossinidius str. 'morsitans', complete genome4e-1075.8BLASTN svgBLASTP svg
NC_007712:29780002978000300020322204Sodalis glossinidius str. 'morsitans', complete genome4e-1075.8BLASTN svgBLASTP svg
NC_012912:47377034737703476071123009Dickeya zeae Ech1591, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_014500:20191132019113204779528683Dickeya dadantii 3937 chromosome, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_012912:22857782285778231059124814Dickeya zeae Ech1591, complete genome7e-0971.9BLASTN svgBLASTP svg
NC_012779:261438*26143828632424887Edwardsiella ictaluri 93-146, complete genome7e-0971.9BLASTN svgBLASTP svg
NC_004431:11665681166568119813631569Escherichia coli CFT073, complete genome7e-0971.9BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_002655:16559441655944168171125768Escherichia coli O157:H7 EDL933, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_002695:15713891571389159815826770Escherichia coli O157:H7 str. Sakai, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_003197:1945858*1945858197472828871Salmonella typhimurium LT2, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_007712:1712667*1712667173153718871Sodalis glossinidius str. 'morsitans', complete genome1e-0767.9BLASTN svgBLASTP svg
NC_007712:1954808*1954808197959924792Sodalis glossinidius str. 'morsitans', complete genome1e-0767.9BLASTN svgBLASTP svg
NC_007712:254000*25400027659922600Sodalis glossinidius str. 'morsitans', complete genome1e-0767.9BLASTN svgBLASTP svg
NC_007712:26499402649940266759917660Sodalis glossinidius str. 'morsitans', complete genome1e-0767.9BLASTN svgBLASTP svg
NC_007712:3629358*3629358365546826111Sodalis glossinidius str. 'morsitans', complete genome1e-0767.9BLASTN svgBLASTP svg
NC_008346:983816*983816100718823373Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete1e-0767.9BLASTN svgBLASTP svg
NC_011080:1944226*1944226198035236127Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-0767.9BLASTN svgBLASTP svg
NC_011083:1993672*1993672201930525634Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-0767.9BLASTN svgBLASTP svg
NC_011206:1379068*1379068140505225985Acidithiobacillus ferrooxidans ATCC 53993, complete genome4e-0765.9BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_002655:46531604653160470328250123Escherichia coli O157:H7 EDL933, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_002695:45841774584177463575951583Escherichia coli O157:H7 str. Sakai, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_015424:2357600*2357600239563038031Aeromonas veronii B565 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_021182:2883716*2883716290856724852Clostridium pasteurianum BC1, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_014562:18442681844268187632632059Pantoea vagans C9-1 chromosome, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_010102:11372471137247116298725741Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,7e-0661.9BLASTN svgBLASTP svg