Pre_GI: BLASTN Hits

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Query: NC_011149:1578451 Salmonella enterica subsp. enterica serovar Agona str. SL483,

Start: 1578451, End: 1598115, Length: 19665

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Salmonella enterica subsp. enterica serovar Agona causes gastroenteritis in humans and is also pathogenic to swine and other food animals. This serovar is able to contain the Salmonella genomic island 1 multidrug resistance gene cluster. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003197:1611302*1611302163313721836Salmonella typhimurium LT2, complete genome018190BLASTN svgBLASTP svg
NC_003198:14632531463253148503221780Salmonella enterica subsp. enterica serovar Typhi str. CT18,010960BLASTN svgBLASTP svg
NC_010067:14140001414000143680422805Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete01445BLASTN svgBLASTP svg
NC_011740:27374672737467275914021674Escherichia fergusonii ATCC 35469, complete genome0696BLASTN svgBLASTP svg
NC_015224:24735822473582249262519044Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,7e-22113BLASTN svgBLASTP svg
NC_012917:23627252362725238725724533Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_009648:18825001882500190677624277Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004547:18375001837500185898821489Erwinia carotovora subsp. atroseptica SCRI1043, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_010634:20046532004653202887424222Yersinia pseudotuberculosis PB1/+, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_010067:24881412488141251937331233Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete1e-0765.9BLASTN svgBLASTP svg
NC_010498:4821519*4821519484497023452Escherichia coli SMS-3-5, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_020063:22300002230000227048640487Enterobacteriaceae bacterium strain FGI 57, complete genome9e-0660BLASTN svgBLASTP svg