Pre_GI: BLASTN Hits

Some Help

Query: NC_011147:792489 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 792489, End: 823524, Length: 31036

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006511:79254379254382457832036Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC039150BLASTN svgBLASTP svg
NC_004631:79981079981083168931880Salmonella enterica subsp. enterica serovar Typhi Ty2, complete033930BLASTN svgBLASTP svg
NC_011149:21795922179592220743527844Salmonella enterica subsp. enterica serovar Agona str. SL483,024550BLASTN svgBLASTP svg
NC_003198:21796882179688220742827741Salmonella enterica subsp. enterica serovar Typhi str. CT18,021560BLASTN svgBLASTP svg
NC_006905:22356072235607226436328757Salmonella enterica subsp. enterica serovar Choleraesuis str017980BLASTN svgBLASTP svg
NC_009792:64288164288166509922219Citrobacter koseri ATCC BAA-895, complete genome02395BLASTN svgBLASTP svg
NC_004431:24449722444972246809923128Escherichia coli CFT073, complete genome01836BLASTN svgBLASTP svg
NC_014121:34538153453815347704723233Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01699BLASTN svgBLASTP svg
NC_015968:30230483023048304630023253Enterobacter asburiae LF7a chromosome, complete genome01620BLASTN svgBLASTP svg
NC_010468:1694729*1694729171759922871Escherichia coli ATCC 8739, complete genome01229BLASTN svgBLASTP svg
NC_010473:2267851*2267851229294125091Escherichia coli str. K-12 substr. DH10B, complete genome01199BLASTN svgBLASTP svg
CP002185:2347413*2347413237250325091Escherichia coli W, complete genome01191BLASTN svgBLASTP svg
NC_011750:955451*95545197876923319Escherichia coli IAI39 chromosome, complete genome01189BLASTN svgBLASTP svg
NC_008253:21985832198583221778119199Escherichia coli 536, complete genome01170BLASTN svgBLASTP svg
NC_014121:34839763483976350876424789Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete0944BLASTN svgBLASTP svg
NC_015968:30535653053565307621422650Enterobacter asburiae LF7a chromosome, complete genome0827BLASTN svgBLASTP svg
NC_015663:49500004950000501991769918Enterobacter aerogenes KCTC 2190 chromosome, complete genome0696BLASTN svgBLASTP svg
NC_011740:2220251*2220251224611525865Escherichia fergusonii ATCC 35469, complete genome0674BLASTN svgBLASTP svg
NC_013421:13978411397841141728819448Pectobacterium wasabiae WPP163, complete genome7e-137496BLASTN svgBLASTP svg
NC_013592:33973043397304341695019647Dickeya dadantii Ech586, complete genome2e-128468BLASTN svgBLASTP svg
NC_008570:1094442*1094442111732922888Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome5e-64254BLASTN svgBLASTP svg
NC_006155:33333033333303335118117879Yersinia pseudotuberculosis IP 32953, complete genome3e-62248BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome7e-60240BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome7e-60240BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome7e-60240BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome7e-60240BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome7e-60240BLASTN svgBLASTP svg
NC_010634:32508103250810326864117832Yersinia pseudotuberculosis PB1/+, complete genome7e-60240BLASTN svgBLASTP svg
NC_007384:2251792*2251792227443422643Shigella sonnei Ss046, complete genome4e-52214BLASTN svgBLASTP svg
CU928160:2239637*2239637226345123815Escherichia coli IAI1 chromosome, complete genome6e-51210BLASTN svgBLASTP svg
NC_007951:17112231711223173758426362Burkholderia xenovorans LB400 chromosome 1, complete sequence5e-33151BLASTN svgBLASTP svg
NC_012660:4558122*4558122459234134220Pseudomonas fluorescens SBW25 chromosome, complete genome3e-19105BLASTN svgBLASTP svg
NC_014910:20450882045088206811623029Alicycliphilus denitrificans BC chromosome, complete genome7e-1797.6BLASTN svgBLASTP svg
NC_020211:22065002206500222782621327Serratia marcescens WW4, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_014366:1814000*1814000183684822849Gamma proteobacterium HdN1, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_015422:23269422326942235046523524Alicycliphilus denitrificans K601 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_013194:63403963403965427420236Candidatus Accumulibacter phosphatis clade IIA str. UW-1, complete3e-1385.7BLASTN svgBLASTP svg
NC_012559:1228280*1228280127461346334Laribacter hongkongensis HLHK9, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_011146:63912639128529321382Geobacter bemidjiensis Bem, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_010125:3467379*3467379349031122933Gluconacetobacter diazotrophicus PAl 5, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_015057:241103*24110326799426892Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequence6e-1177.8BLASTN svgBLASTP svg
NC_008786:25735582573558259844924892Verminephrobacter eiseniae EF01-2, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_003296:14615381461538148411822581Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete2e-1075.8BLASTN svgBLASTP svg
NC_006370:768745*76874579247423730Photobacterium profundum SS9 chromosome 1, complete sequence2e-1075.8BLASTN svgBLASTP svg
NC_005966:33348643334864335435519492Acinetobacter sp. ADP1, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_002488:22358832235883226042224540Xylella fastidiosa 9a5c, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_013959:14283811428381144913220752Sideroxydans lithotrophicus ES-1 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg