Pre_GI: BLASTN Hits

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Query: NC_011147:3789696 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 3789696, End: 3814292, Length: 24597

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010102:39554793955479397940323925Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,026450BLASTN svgBLASTP svg
NC_006511:37940173794017381725023234Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC025190BLASTN svgBLASTP svg
NC_011080:39764413976441399977023330Salmonella enterica subsp. enterica serovar Newport str. SL254,024000BLASTN svgBLASTP svg
NC_011083:40200004020000404339423395Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,023910BLASTN svgBLASTP svg
NC_011149:39303583930358395376323406Salmonella enterica subsp. enterica serovar Agona str. SL483,023860BLASTN svgBLASTP svg
NC_003197:40058574005857402918723331Salmonella typhimurium LT2, complete genome023850BLASTN svgBLASTP svg
NC_006905:39427533942753396819425442Salmonella enterica subsp. enterica serovar Choleraesuis str020920BLASTN svgBLASTP svg
NC_004631:38096783809678383452924852Salmonella enterica subsp. enterica serovar Typhi Ty2, complete015140BLASTN svgBLASTP svg
NC_003198:38241873824187384903924853Salmonella enterica subsp. enterica serovar Typhi str. CT18,015130BLASTN svgBLASTP svg
NC_010067:37539713753971377672522755Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete010450BLASTN svgBLASTP svg
NC_006511:682863*68286370873225870Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC06690BLASTN svgBLASTP svg
NC_010102:683444*68344472210838665Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,06464BLASTN svgBLASTP svg
NC_011083:23750612375061241289137831Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,06429BLASTN svgBLASTP svg
NC_004631:685357*68535771085325497Salmonella enterica subsp. enterica serovar Typhi Ty2, complete06421BLASTN svgBLASTP svg
NC_003198:22978372297837232227924443Salmonella enterica subsp. enterica serovar Typhi str. CT18,06421BLASTN svgBLASTP svg
NC_003197:23274742327474236419536722Salmonella typhimurium LT2, complete genome06417BLASTN svgBLASTP svg
NC_011149:22945002294500231681122312Salmonella enterica subsp. enterica serovar Agona str. SL483,06389BLASTN svgBLASTP svg
NC_006905:23552902355290237961224323Salmonella enterica subsp. enterica serovar Choleraesuis str06381BLASTN svgBLASTP svg
NC_011080:23426722342672236709924428Salmonella enterica subsp. enterica serovar Newport str. SL254,06318BLASTN svgBLASTP svg
NC_010067:63268363268365799725315Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete04054BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome0813BLASTN svgBLASTP svg
NC_010498:10940001094000111633222333Escherichia coli SMS-3-5, complete genome9e-173615BLASTN svgBLASTP svg
NC_009648:22527572252757228316130405Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome2e-139504BLASTN svgBLASTP svg
NC_013508:2587913*2587913262259934687Edwardsiella tarda EIB202, complete genome1e-79305BLASTN svgBLASTP svg
NC_013421:29722692972269300638334115Pectobacterium wasabiae WPP163, complete genome4e-64254BLASTN svgBLASTP svg
NC_012779:26648492664849268361918771Edwardsiella ictaluri 93-146, complete genome2e-62248BLASTN svgBLASTP svg
NC_010694:12508411250841127452923689Erwinia tasmaniensis, complete genome5e-57230BLASTN svgBLASTP svg
NC_014306:35249803524980358375158772Erwinia billingiae Eb661, complete genome9e-56226BLASTN svgBLASTP svg
NC_015061:12519051251905128092529021Rahnella sp. Y9602 chromosome, complete genome2e-50208BLASTN svgBLASTP svg
NC_004578:40613724061372409399732626Pseudomonas syringae pv. tomato str. DC3000, complete genome7e-41176BLASTN svgBLASTP svg
NC_015224:32917363291736331359921864Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,6e-26127BLASTN svgBLASTP svg
NC_008344:49039*4903913459985561Nitrosomonas eutropha C91, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_015458:19388601938860196301624157Pusillimonas sp. T7-7 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015224:4473230*4473230449714523916Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,8e-1693.7BLASTN svgBLASTP svg
NC_010170:39442283944228399478350556Bordetella petrii, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009092:179226*17922620808728862Shewanella loihica PV-4, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_015222:14925001492500151210019601Nitrosomonas sp. AL212 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013854:3200912*3200912322443023519Azospirillum sp. B510, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015572:25419682541968256409922132Methylomonas methanica MC09 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015731:13817371381737140468922953Nitrosomonas sp. Is79A3 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014623:44264164426416444997023555Stigmatella aurantiaca DW4/3-1 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015497:12878771287877133880050924Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg