Pre_GI: BLASTN Hits

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Query: NC_011147:2085241 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2085241, End: 2113370, Length: 28130

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006511:20900582090058211818728130Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC054340BLASTN svgBLASTP svg
NC_003197:77623877623880454628309Salmonella typhimurium LT2, complete genome045110BLASTN svgBLASTP svg
NC_011083:82465982465985295528297Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,045000BLASTN svgBLASTP svg
NC_011080:78085078085080915728308Salmonella enterica subsp. enterica serovar Newport str. SL254,044880BLASTN svgBLASTP svg
NC_010102:23228662322866235445731592Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,036210BLASTN svgBLASTP svg
NC_004631:22058212205821223319827378Salmonella enterica subsp. enterica serovar Typhi Ty2, complete018670BLASTN svgBLASTP svg
NC_003198:75177975177977932827550Salmonella enterica subsp. enterica serovar Typhi str. CT18,018060BLASTN svgBLASTP svg
NC_012779:2755338*2755338278000524668Edwardsiella ictaluri 93-146, complete genome0805BLASTN svgBLASTP svg
CP002185:79473279473281843123700Escherichia coli W, complete genome0777BLASTN svgBLASTP svg
NC_010468:32093263209326323524825923Escherichia coli ATCC 8739, complete genome0761BLASTN svgBLASTP svg
NC_003143:12331281233128125981426687Yersinia pestis CO92, complete genome0741BLASTN svgBLASTP svg
NC_008150:65089965089967359922701Yersinia pestis Antiqua, complete genome0741BLASTN svgBLASTP svg
NC_010159:14179931417993144109923107Yersinia pestis Angola, complete genome0741BLASTN svgBLASTP svg
NC_010634:13423931342393136733024938Yersinia pseudotuberculosis PB1/+, complete genome0733BLASTN svgBLASTP svg
NC_008149:3251196*3251196327595124756Yersinia pestis Nepal516, complete genome3e-114420BLASTN svgBLASTP svg
NC_005810:11302511130251115417023920Yersinia pestis biovar Microtus str. 91001, complete genome3e-114420BLASTN svgBLASTP svg
NC_004088:3382148*3382148340611023963Yersinia pestis KIM, complete genome3e-114420BLASTN svgBLASTP svg
NC_009434:20065002006500203099424495Pseudomonas stutzeri A1501, complete genome2e-60242BLASTN svgBLASTP svg
NC_015740:18453701845370186638521016Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-55226BLASTN svgBLASTP svg
NC_007963:1370903*1370903139119320291Chromohalobacter salexigens DSM 3043, complete genome4e-55224BLASTN svgBLASTP svg
NC_009092:18748881874888191420239315Shewanella loihica PV-4, complete genome9e-50206BLASTN svgBLASTP svg
NC_015224:15147471514747154041825672Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-32149BLASTN svgBLASTP svg
NC_010682:37450003745000376509920100Ralstonia pickettii 12J chromosome 1, complete sequence3e-28135BLASTN svgBLASTP svg
NC_005085:1096000*1096000111962323624Chromobacterium violaceum ATCC 12472, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_020211:4168189*4168189419217623988Serratia marcescens WW4, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_015563:47734154773415479788824474Delftia sp. Cs1-4 chromosome, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_012559:23095662309566233407924514Laribacter hongkongensis HLHK9, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_015663:44479844447984447024622263Enterobacter aerogenes KCTC 2190 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_010725:1003760*1003760103039426635Methylobacterium populi BJ001, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010498:22783062278306230147623171Escherichia coli SMS-3-5, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_012559:14975481497548152859931052Laribacter hongkongensis HLHK9, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_015061:19022511902251193341231162Rahnella sp. Y9602 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_021066:46029246029251915858867Raoultella ornithinolytica B6, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_011894:200928*20092822402523098Methylobacterium nodulans ORS 2060, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_014006:850763*85076390963758875Sphingobium japonicum UT26S chromosome 1, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_014718:630188*63018865954429357Burkholderia rhizoxinica HKI 454 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_014910:2015627*2015627203840722781Alicycliphilus denitrificans BC chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_010125:15383351538335158603047696Gluconacetobacter diazotrophicus PAl 5, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007912:26975812697581271653118951Saccharophagus degradans 2-40, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010678:642769*64276966483622068Ralstonia pickettii 12J chromosome 2, complete sequence9e-1073.8BLASTN svgBLASTP svg
NC_021066:17780001778000179688518886Raoultella ornithinolytica B6, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013722:2810721*2810721284465133931Xanthomonas albilineans, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009077:48103794810379483961029232Mycobacterium sp. JLS, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010694:15020191502019153332131303Erwinia tasmaniensis, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_010468:4252940*4252940428159928660Escherichia coli ATCC 8739, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_007164:511171*51117153769026520Corynebacterium jeikeium K411, complete genome8e-0763.9BLASTN svgBLASTP svg
CP002797:4411763*4411763444042528663Escherichia coli NA114, complete genome8e-0763.9BLASTN svgBLASTP svg