Pre_GI: BLASTN Hits

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Query: NC_011147:1239904 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1239904, End: 1259511, Length: 19608

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009792:13455001345500136809322594Citrobacter koseri ATCC BAA-895, complete genome01007BLASTN svgBLASTP svg
NC_013716:1178383*1178383120516726785Citrobacter rodentium ICC168, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_013716:44082014408201443527827078Citrobacter rodentium ICC168, complete genome9e-40172BLASTN svgBLASTP svg
NC_012880:31252613125261315478529525Dickeya dadantii Ech703, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_020181:92900092900096303034031Enterobacter aerogenes EA1509E, complete genome01122BLASTN svgBLASTP svg
NC_015663:45221094522109454904226934Enterobacter aerogenes KCTC 2190 chromosome, complete genome0745BLASTN svgBLASTP svg
NC_020063:24809832480983250703626054Enterobacteriaceae bacterium strain FGI 57, complete genome01013BLASTN svgBLASTP svg
NC_000913:1188999*1188999122144532447Escherichia coli K12, complete genome9e-0660BLASTN svgBLASTP svg
NC_002655:30194030194032759925660Escherichia coli O157:H7 EDL933, complete genome2e-19105BLASTN svgBLASTP svg
NC_002695:30193930193932873026792Escherichia coli O157:H7 str. Sakai, complete genome2e-19105BLASTN svgBLASTP svg
AC_000091:1191353*1191353122209930747Escherichia coli W3110 DNA, complete genome9e-0660BLASTN svgBLASTP svg
NC_010067:892729*89272992523832510Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-1591.7BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str1e-0765.9BLASTN svgBLASTP svg
NC_011083:1993672*1993672201930525634Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-1179.8BLASTN svgBLASTP svg
NC_011080:11669511166951119330926359Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-1695.6BLASTN svgBLASTP svg
NC_011080:2761403*2761403277959918197Salmonella enterica subsp. enterica serovar Newport str. SL254,9e-0660BLASTN svgBLASTP svg
NC_011080:27224922722492274217119680Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-19105BLASTN svgBLASTP svg
NC_011080:1944226*1944226198035236127Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-1179.8BLASTN svgBLASTP svg
NC_006511:12438171243817126629922483Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC025660BLASTN svgBLASTP svg
NC_010102:18293571829357185417624820Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-1385.7BLASTN svgBLASTP svg
NC_010102:17797071779707181158331877Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-1385.7BLASTN svgBLASTP svg
NC_010102:11372471137247116298725741Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-1179.8BLASTN svgBLASTP svg
NC_003197:1945858*1945858197472828871Salmonella typhimurium LT2, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_003197:27207262720726274079420069Salmonella typhimurium LT2, complete genome2e-19105BLASTN svgBLASTP svg
NC_007613:1353500*1353500137891925420Shigella boydii Sb227, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_007712:25235832523583254959926017Sodalis glossinidius str. 'morsitans', complete genome8e-31143BLASTN svgBLASTP svg