Pre_GI: BLASTP Hits

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Query: NC_011147:854730:869621 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 869621, End: 870919, Length: 1299

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:854785:8696768696768709741299Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative O-antigen transporter0773
NC_003198:2109775:2125658212565821269561299Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative O-antigen transporter0766
NC_004631:862002:8769728769728782701299Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative O-antigen transporter0766
NC_011294:2156425:2172305217230521736031299Salmonella enterica subsp. enterica serovar Enteritidis strO-antigen transporter0762
NC_011274:2147427:2163307216330721646051299Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91O-antigen transporter0762
NC_016832:861956:8769418769418782241284Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,O-antigen transporter0755
NC_016831:854973:8699618699618712441284Salmonella enterica subsp. enterica serovar Gallinarum/pullorumO-antigen transporter0751
NC_011205:2283438:2299321229932123006041284Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853O-antigen transporter0749
NC_010102:861860:8758828758828771741293Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-127454
NC_016810:2150709:2166340216634021676321293Salmonella enterica subsp. enterica serovar Typhimurium strputative O-antigen transporter4e-127454
NC_016856:2204546:2220177222017722214691293Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative O-antigen transferase4e-127454
NC_016857:2150709:2166340216634021676321293Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative O-antigen transporter4e-127454
NC_016863:2152739:2168370216837021696621293Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative O-antigen transferase4e-127454
NC_017046:2150072:2165703216570321669951293Salmonella enterica subsp. enterica serovar Typhimurium str. 798O-antigen transporter4e-127454
NC_003197:2152994:2168625216862521699171293Salmonella typhimurium LT2, complete genomeputative O-antigen transferase9e-127453
NC_011094:2172271:2190167219016721914471281Salmonella enterica subsp. enterica serovar Schwarzengrund strO-antigen transporter1e-126453
NC_011083:2200613:2216244221624422175241281Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative O-antigen transporter3e-126451
NC_011149:2110861:2126490212649021277821293Salmonella enterica subsp. enterica serovar Agona str. SL483,putative O-antigen transporter6e-126451
NC_006511:854785:8725528725528738591308Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative glycosyltransferase2e-104379
NC_006511:854785:8754378754378767441308Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative glycosyltransferase2e-104379
NC_016860:2148535:216416621641662165071906Salmonella enterica subsp. enterica serovar Typhimurium strputative O-antigen transporter3e-86318
NC_010465:3465351:3483769348376934850761308Yersinia pseudotuberculosis YPIII, complete genomeLPS side chain defect: putative O-antigen transferase6e-71268
NC_004547:1600900:1624709162470916260281320Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative O-antigen transporter3e-42173
NC_011979:2352961:2362433236243323636861254Geobacter sp. FRC-32, complete genomepolysaccharide biosynthesis protein2e-26120
NC_015914:917124:9171249171249185001377Cyclobacterium marinum DSM 745 chromosome, complete genomepolysaccharide biosynthesis protein2e-0654.3