Pre_GI: BLASTP Hits

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Query: NC_011147:792489:800599 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 800599, End: 801216, Length: 618

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:792543:800653800653801270618Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-120430
NC_011149:2179592:219538221953822195999618Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein5e-118422
NC_012125:1632150:164028216402821640899618Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-116417
NC_004631:799810:807944807944808561618Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein7e-116416
NC_003198:2179688:219537521953752195992618Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein7e-116416
NC_006905:2235607:225231322523132252930618Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical protein7e-116416
NC_016832:799764:807901807901808515615Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein3e-115413
NC_008253:2198583:220275422027542203368615Escherichia coli 536, complete genomehypothetical protein2e-33141
NC_004431:2444972:245222124522212452835615Escherichia coli CFT073, complete genomehypothetical protein2e-33141