Pre_GI: BLASTP Hits

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Query: NC_011147:792489:798041 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 798041, End: 798457, Length: 417

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004631:799810:805362805362805778417Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-75280
NC_003198:2179688:219815821981582198574417Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-75280
NC_006511:792543:798095798095798511417Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-75280
NC_012125:1632150:163770016377001638116417Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein8e-74275
NC_006905:2235607:225509622550962255512417Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein8e-74275
NC_011149:2179592:219816521981652198434270Salmonella enterica subsp. enterica serovar Agona str. SL483,Tir chaperone1e-45181
NC_002695:4584177:459932245993224599792471Escherichia coli O157:H7 str. Sakai, complete genomeCesT1e-40165
NC_002655:4653160:466830546683054668775471Escherichia coli O157:H7 EDL933, complete genomehypothetical protein1e-40165
NC_011353:4688000:470242647024264702896471Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeTir chaperone1e-40165
NC_013008:4643825:465846746584674658937471Escherichia coli O157:H7 str. TW14359 chromosome, complete genomemolecular chaperone1e-40165
NC_013941:4470932:448683244868324487302471Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeTir chaperone1e-40165
NC_011601:4096427:411322241132224113692471Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomechaperone CesT2e-40164
NC_013361:5319497:535413453541345354604471Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS chaperone CesT3e-40163
NC_013353:3669500:368928236892823689752471Escherichia coli O103:H2 str. 12009, complete genomechaperone CesT3e-40163
AP010958:3669500:368928236892823689752471Escherichia coli O103:H2 str. 12009 DNA, complete genomechaperone CesT3e-40163
NC_013364:3701895:373089537308953731365471Escherichia coli O111:H- str. 11128, complete genomeputative chaperone CesT5e-40162
NC_016832:799764:805562805562805732171Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Tir chaperone8e-25112