Pre_GI: BLASTP Hits

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Query: NC_011147:4221000:4233081 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 4233081, End: 4246763, Length: 13683

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:4225455:42373944237394425107613683Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative inner membrane protein08565
NC_006905:4405301:44170914417091443377016680Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein06532
NC_011205:4486142:44979334497933451461216680Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein06532
NC_012125:4400636:44124264412426442910516680Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein06530
NC_011294:4327904:43396954339695435637416680Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein06524
NC_011274:4305812:43176034317603433428216680Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91large repetitive protein06523
NC_016831:4286000:42979534297953431463216680Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein06522
NC_011080:4461851:44736424473642449032116680Salmonella enterica subsp. enterica serovar Newport str. SL254,large repetitive protein06516
NC_016856:4482845:44960164496016451269516680Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein06506
NC_010102:4396500:44084304408430442510916680Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein06503
NC_016863:4431831:44436224443622446030116680Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein06500
NC_016857:4491976:45037674503767452044616680Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein06500
NC_016810:4491975:45037664503766452044516680Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein06500
NC_003197:4470683:44824744482474449915316680Salmonella typhimurium LT2, complete genomeputative inner membrane protein06500
NC_016860:4575772:45875634587563460424216680Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein06500
NC_017046:4490500:45024274502427451910616680Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein06497
NC_011094:4361238:43730284373028438971316686Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein06493
NC_011149:4390315:44021044402104441878916686Salmonella enterica subsp. enterica serovar Agona str. SL483,putative Ig domain protein06491
NC_011083:4466634:44784254478425449511016686Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative Ig domain family06491
NC_015761:4098481:41103084110308412697816671Salmonella bongori NCTC 12419, complete genomelarge repetitive protein05827
NC_010067:3310336:33238573323857334592122065Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein05058
NC_016832:4288980:4309378430937843161516774Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Large repetitive protein04249
NC_003198:4315807:4337507433750743442776771Salmonella enterica subsp. enterica serovar Typhi str. CT18,large repetitive protein04244
NC_004631:4300457:4322157432215743289276771Salmonella enterica subsp. enterica serovar Typhi Ty2, completelarge repetitive protein04244
NC_003198:4315807:4327598432759843374499852Salmonella enterica subsp. enterica serovar Typhi str. CT18,large repetitive protein03827
NC_004631:4300457:4312248431224843220999852Salmonella enterica subsp. enterica serovar Typhi Ty2, completelarge repetitive protein03827
NC_016832:4288980:4300771430077143093238553Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Large repetitive protein03643
NC_015761:4188250:4188250418825041978439594Salmonella bongori NCTC 12419, complete genomelarge repetitive protein8e-155550
NC_013508:343617:3455573455573536448088Edwardsiella tarda EIB202, complete genomehypothetical protein2e-142509
NC_020063:1051310:10708751070875108258011706Enterobacteriaceae bacterium strain FGI 57, complete genomeVCBS repeat-containing protein2e-114416
NC_010067:191190:22185222185223335311502Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-105385
NC_016514:3573400:36072413607241361841511175Enterobacter cloacae EcWSU1 chromosome, complete genomehypothetical protein2e-102376
NC_014121:1038554:1033321103332110385645244Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completelarge repetitive protein2e-99366
NC_006350:1909639:1925148192514819348379690Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative hemolysin-related protein8e-93344
NC_009076:2050621:2050621205062120602359615Burkholderia pseudomallei 1106a chromosome I, complete sequencetype I secretion target repeat protein1e-91340
NC_007434:2449721:2449721244972124584568736Burkholderia pseudomallei 1710b chromosome I, complete sequencecable pili-associated 22 kDa adhesin protein2e-84317
NC_015968:2195645:21956452195645221365018006Enterobacter asburiae LF7a chromosome, complete genometype 1 secretion target domain-containng protein4e-82309
NC_014121:1038554:1038554103855410455016948Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completelarge repetitive protein4e-67259
NC_015856:4203301:4203301420330142096456345Collimonas fungivorans Ter331 chromosome, complete genomelarge repetitive protein1e-64251
NC_014837:1570500:1594309159430916013527044Pantoea sp. At-9b chromosome, complete genomeouter membrane adhesin like proteiin6e-64248
NC_014117:2684631:2708667270866727122573591Burkholderia sp. CCGE1002 chromosome chromosome 1, completeputative hemagglutinin/hemolysin-related protein2e-56223
NC_020260:603796:63995163995165197712027Cronobacter sakazakii Sp291, complete genomehypothetical protein2e-49200
NC_013860:171235:15875415875417130512552Azospirillum sp. B510 plasmid pAB510f, complete sequencehypothetical protein2e-42177
NC_009802:1948119:19523301952330196757215243Campylobacter concisus 13826, complete genomelarge repetitive protein8e-41171
NC_020126:3979792:3988260398826039930924833Myxococcus stipitatus DSM 14675, complete genomeOmpA family protein3e-40169
NC_005085:1870890:1880520188052018866156096Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein6e-36155
NC_012881:2405414:2425347242534724332877941Desulfovibrio salexigens DSM 2638, complete genomehypothetical protein3e-35153
NC_020164:2329340:2335629233562923443978769Staphylococcus warneri SG1, complete genomeputative biofilm-associated protein3e-24117
NC_021171:4277484:4279869427986942848214953Bacillus sp. 1NLA3E, complete genomehypothetical protein4e-22109
NC_014654:302000:30201030201031331911310Halanaerobium sp. 'sapolanicus' chromosome, complete genomeconserved repeat domain protein9e-22108
NC_006138:2379332:2397652239765224057098058Desulfotalea psychrophila LSv54, complete genomehypothetical protein6e-20102
NC_006138:2397652:2397652239765224057098058Desulfotalea psychrophila LSv54, complete genomehypothetical protein6e-20102
NC_015177:2795487:2808655280865528163377683Pedobacter saltans DSM 12145 chromosome, complete genomeFibronectin type III domain protein2e-1587.4
NC_009802:1827138:1838221183822118429814761Campylobacter concisus 13826, complete genomeamino acid ABC transporter, periplasmic binding protein1e-1485.5
NC_004668:3184319:3195824319582432010585235Enterococcus faecalis V583, complete genomecell wall surface anchor family protein6e-1379.3
NC_017316:2710021:2717455271745527224194965Enterococcus faecalis OG1RF chromosome, complete genomecell wall surface anchor family protein6e-1379.3
NC_010002:4930865:49489694948969496620017232Delftia acidovorans SPH-1, complete genomeAPHP domain protein8e-1379
NC_016023:915178:9151789151789190143837Bacillus coagulans 36D1 chromosome, complete genomepeptidase M30, hyicolysin1e-1278.6
NC_015634:359500:3981773981774015123336Bacillus coagulans 2-6 chromosome, complete genomehypothetical protein4e-1276.6
NC_008525:108687:1280091280091330395031Pediococcus pentosaceus ATCC 25745, complete genomehypothetical protein1e-1175.1
NC_014166:1424754:1445917144591714498223906Arcobacter nitrofigilis DSM 7299 chromosome, complete genomehemolysin-type calcium-binding region6e-1069.7
NC_017082:6444522:6455481645548164581232643Bradyrhizobium sp. S23321, complete genomehypothetical protein2e-0968.2
NC_012918:2850755:2859325285932528629843660Geobacter sp. M21 chromosome, complete genomefibronectin type III domain-containing protein2e-0968.2
NC_009483:66502:8029780297853845088Geobacter uraniireducens Rf4 chromosome, complete genomefibronectin I domain-containing protein4e-0967
NC_013926:1009718:1023692102369210259262235Aciduliprofundum boonei T469 chromosome, complete genomehypothetical protein1e-0865.5
NC_009483:3480740:35054653505465351622510761Geobacter uraniireducens Rf4 chromosome, complete genomehypothetical protein9e-0965.5
NC_014915:3039639:3042601304260130441031503Geobacillus sp. Y412MC52 chromosome, complete genomehypothetical protein3e-0863.5
NC_002939:2124642:2130067213006721332103144Geobacter sulfurreducens PCA, complete genomefibronectin type III domain protein7e-0862.4
NC_006510:2910000:2922925292292529244451521Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-0760.5
NC_009464:300422:3220853220853253183234Uncultured methanogenic archaeon RC-I, complete genomehypothetical protein4e-0656.6
NC_007645:2842957:2850834285083428606109777Hahella chejuensis KCTC 2396, complete genomeprotein containing fibronectin type III domains7e-0656.2
NC_014306:1981956:1983683198368319855991917Erwinia billingiae Eb661, complete genomehypothetical protein7e-0655.8
NC_008555:444927:4607674607674668506084Listeria welshimeri serovar 6b str. SLCC5334, complete genomepeptidoglycan linked surface protein, putative8e-0655.8