Pre_GI: BLASTP Hits

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Query: NC_011147:4221000:4230471 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 4230471, End: 4231790, Length: 1320

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008570:3013263:3029012302901230303401329Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeagglutination protein9e-0652
NC_014117:2684631:2696170269617026977021533Burkholderia sp. CCGE1002 chromosome chromosome 1, completeouter membrane efflux protein3e-0756.6
NC_013716:3109700:3136316313631631378121497Citrobacter rodentium ICC168, complete genomeputative outer membrane efflux protein of T1SS7e-0755.8
NC_013173:8923:2525425254265851332Desulfomicrobium baculatum DSM 4028, complete genometype I secretion outer membrane protein, TolC family2e-1170.9
NC_012881:2405414:2423803242380324253441542Desulfovibrio salexigens DSM 2638, complete genomeouter membrane efflux protein4e-1686.3
NC_015185:485866:4858664858664871911326Desulfurobacterium thermolithotrophum DSM 11699 chromosome,outer membrane efflux protein7e-0962.4
NC_012912:2426520:2427879242787924292791401Dickeya zeae Ech1591, complete genometype I secretion outer membrane protein, TolC family9e-0858.5
NC_020063:1051310:1069391106939110707971407Enterobacteriaceae bacterium strain FGI 57, complete genometype I secretion outer membrane protein, TolC family1e-0758.2
NC_007626:3393940:3407013340701334086561644Magnetospirillum magneticum AMB-1, complete genomeOuter membrane protein4e-1066.2
NC_017505:1783476:1783476178347617848791404Neisseria meningitidis alpha710 chromosome, complete genomeputative periplasmic type I secretion system protein1e-0964.7
NC_017517:1807072:1807072180707218083821311Neisseria meningitidis M01-240355 chromosome, complete genomeputative type I secretion outer membrane protein, TolC family2e-0964.3
NC_014837:1570500:1588988158898815903071320Pantoea sp. At-9b chromosome, complete genomeouter membrane efflux protein4e-0859.7
NC_007498:357484:3606473606473620711425Pelobacter carbinolicus DSM 2380, complete genomeouter membrane protein OmpK2e-0860.8
NC_012660:4558122:4556731455673145581251395Pseudomonas fluorescens SBW25 chromosome, complete genomeouter membrane efflux lipoprotein1e-0655.1
NC_020209:5077410:5098684509868451000361353Pseudomonas poae RE*1-1-14, complete genomeTolC family type I secretion outer membrane protein2e-0757.8
NC_015761:4098481:4107697410769741090161320Salmonella bongori NCTC 12419, complete genometype-I secretion protein0821
NC_010067:191190:2203772203772217861410Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-0757
NC_010067:3310336:3347212334721233485311320Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0776
NC_011149:4390315:439988743998874400813927Salmonella enterica subsp. enterica serovar Agona str. SL483,putative type-I secretion protein8e-178623
NC_006905:2857699:2856293285629328577021410Salmonella enterica subsp. enterica serovar Choleraesuis strputative outer membrane efflux protein7e-0755.8
NC_006905:4405301:4414481441448144158001320Salmonella enterica subsp. enterica serovar Choleraesuis strputative ABC exporter outer membrane component homolog0889
NC_011205:4486142:449571644957164496642927Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853ABC exporter outer membrane component6e-177620
NC_011294:4327904:4337085433708543384041320Salmonella enterica subsp. enterica serovar Enteritidis strtype-I secretion protein0889
NC_011274:4305812:4314993431499343163121320Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type-I secretion protein0889
NC_016831:4286000:429573642957364296662927Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative type-I secretion protein2e-177622
NC_011083:2847318:2847318284731828487271410Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,type I secretion outer membrane protein, TolC family7e-0755.8
NC_011083:4466634:447620844762084477134927Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative ABC exporter outer membrane component1e-176619
NC_011080:4461851:447142544714254472351927Salmonella enterica subsp. enterica serovar Newport str. SL254,putative type-I secretion protein2e-178625
NC_006511:4225455:4234784423478442361031320Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative type-I secretion protein0892
NC_010102:4396500:4405820440582044071391320Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0892
NC_012125:2826624:2838163283816328395721410Salmonella enterica subsp. enterica serovar Paratyphi C straintype I secretion protein2e-0653.9
NC_012125:4400636:4409816440981644111351320Salmonella enterica subsp. enterica serovar Paratyphi C strainABC exporter outer membrane component-like protein0889
NC_011094:4361238:437081143708114371737927Salmonella enterica subsp. enterica serovar Schwarzengrund strABC transporter outer membrane protein2e-177622
NC_011094:2791719:2791719279171927931281410Salmonella enterica subsp. enterica serovar Schwarzengrund strtype I secretion outer membrane protein, TolC family protein3e-0653.9
NC_003198:4315807:4325000432500043263071308Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative type-I secretion protein0872
NC_016832:4288980:429856642985664299480915Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,ABC exporter outer membrane component1e-172606
NC_004631:4300457:4309650430965043109571308Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative type-I secretion protein0872
NC_016810:4491975:4501156450115645024751320Salmonella enterica subsp. enterica serovar Typhimurium strputative type-I secretion protein0889
NC_016860:4575772:458534645853464586272927Salmonella enterica subsp. enterica serovar Typhimurium strABC transporter permease2e-177622
NC_016856:4482845:4493406449340644947251320Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative ABC exporter outer membrane component0889
NC_017046:4490500:450021045002104501136927Salmonella enterica subsp. enterica serovar Typhimurium str. 798type-I secretion protein2e-177622
NC_016857:4491976:4501157450115745024761320Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative ABC exporter outer membrane component0889
NC_016863:4431831:4441012444101244423311320Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative ABC exporter outer membrane component0889
NC_003197:4470683:4479864447986444811831320Salmonella typhimurium LT2, complete genomeputative ABC exporter outer membrane component0889
NC_020064:1547524:1575771157577115771471377Serratia marcescens FGI94, complete genometype I secretion outer membrane protein, TolC family2e-0654.3
NC_020211:1704500:1734374173437417357531380Serratia marcescens WW4, complete genomeTolC family type I secretion outer membrane protein3e-0653.5
NC_009832:1719149:1749485174948517508641380Serratia proteamaculans 568, complete genometype I secretion outer membrane protein, TolC family5e-0652.8
NC_015566:1659288:1692765169276516941411377Serratia sp. AS12 chromosome, complete genometype I secretion outer membrane protein, TolC family5e-0652.8
NC_015567:1660462:1692777169277716941531377Serratia sp. AS9 chromosome, complete genometype I secretion outer membrane protein, TolC family5e-0652.8
NC_019902:97987:1160201160201174771458Thioalkalivibrio nitratireducens DSM 14787, complete genomeAgglutination protein1e-0757.8
NC_013889:1382705:1385254138525413867081455Thioalkalivibrio sp. K90mix chromosome, complete genometype I secretion outer membrane protein, TolC family1e-1378.2
NC_014931:5470242:5483322548332254847371416Variovorax paradoxus EPS chromosome, complete genometype I secretion outer membrane protein, TolC family2e-1687
NC_011753:1501868:1518258151825815195711314Vibrio splendidus LGP32 chromosome 1, complete genomeouter membrane protein1e-0861.2