Pre_GI: BLASTP Hits

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Query: NC_011147:3789696:3790223 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 3790223, End: 3790585, Length: 363

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:3794017:379454437945443794906363Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-54211
NC_006905:3942753:394603939460393946401363Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein4e-54209
NC_011149:3930358:393088539308853931247363Salmonella enterica subsp. enterica serovar Agona str. SL483,inner membrane protein YidG4e-54209
NC_003197:4005857:400638440063844006746363Salmonella typhimurium LT2, complete genomeputative inner membrane protein4e-54209
NC_011094:3887648:388817538881753888537363Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein4e-54209
NC_011205:4038884:403941140394114039773363Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein4e-54209
NC_016810:4027170:402769740276974028059363Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein4e-54209
NC_016856:4019549:402007640200764020438363Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein4e-54209
NC_016857:4025767:402769840276984028060363Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein4e-54209
NC_016860:4110968:411149541114954111857363Salmonella enterica subsp. enterica serovar Typhimurium strinner membrane protein YidG4e-54209
NC_016863:3967156:396768339676833968045363Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein4e-54209
NC_017046:4025998:402652540265254026887363Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein4e-54209
NC_011080:3976441:397696839769683977330363Salmonella enterica subsp. enterica serovar Newport str. SL254,inner membrane protein YidG1e-53208
NC_011083:4020000:402059340205934020955363Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane protein YidG1e-53208
NC_011274:3799696:381748538174853817847363Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-53208
NC_011294:3880500:388104138810413881403363Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-53208
NC_016831:3779611:379831637983163798678363Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-53208
NC_016832:3798475:381626938162693816631363Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane protein yidG1e-52204
NC_004631:3809678:382747238274723827834363Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein1e-52204
NC_003198:3824187:384198238419823842344363Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-52204
NC_004337:3590323:389676038967603897122363Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-41166