Pre_GI: BLASTP Hits

Some Help

Query: NC_011147:2713937:2715049 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2715049, End: 2715318, Length: 270

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:894955:926514926514926783270Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-47187
NC_011080:2870428:287042828704282870697270Salmonella enterica subsp. enterica serovar Newport str. SL254,zinc-finger protein3e-47187
NC_006511:2718401:271951327195132719782270Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative phage gene3e-47187
NC_013592:804288:826946826946827212267Dickeya dadantii Ech586, complete genometranscriptional activator Ogr/delta3e-40163
NC_014500:894136:926246926246926566321Dickeya dadantii 3937 chromosome, complete genomebacteriophage transcription regulator protein5e-40162
NC_013892:992811:995333995333995599267Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein5e-36149
NC_015224:3291736:330569933056993306046348Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Phage transcriptional activator, Ogr/delta6e-27119
NC_009778:2951207:296715029671502967422273Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-23107
NC_015061:2770856:277464827746482774962315Rahnella sp. Y9602 chromosome, complete genometranscriptional activator Ogr/delta4e-23106
NC_009784:253852:270820270820271071252Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein2e-2097.8
NC_009348:4135002:414252641425264142777252Aeromonas salmonicida subsp. salmonicida A449, complete genomephage protein1e-1891.7
NC_008750:3314309:333101033310103331258249Shewanella sp. W3-18-1, complete genomephage transcriptional activator, Ogr/delta3e-1890.5
NC_008570:2216736:226622122662212266472252Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomephage transcriptional activator, Ogr/Delta, putative2e-1787.8
NC_012779:2127542:216214521621452162414270Edwardsiella ictaluri 93-146, complete genomehypothetical protein6e-1579.7
NC_012917:3198000:320699032069903207238249Pectobacterium carotovorum subsp. carotovorum PC1, complete genome1e-1478.6
NC_008228:776000:790563790563790808246Pseudoalteromonas atlantica T6c, complete genomephage transcriptional activator, Ogr/delta1e-1375.1
NC_007645:6858465:687782168778216878084264Hahella chejuensis KCTC 2396, complete genomehypothetical protein3e-1373.9
NC_011883:269497:285407285407285649243Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,transcriptional activator Ogr/delta1e-1168.9
NC_008751:1762562:176916017691601769399240Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomephage transcriptional activator, Ogr/delta2e-1064.3
NC_008751:3214000:321974332197433219985243Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomephage transcriptional activator, Ogr/delta6e-0959.7
NC_012856:3270709:328972332897233289989267Ralstonia pickettii 12D chromosome 1, complete genometranscriptional activator Ogr/delta1e-0858.5
NC_003295:998000:101281110128111013032222Ralstonia solanacearum GMI1000, complete genomePUTATIVE BACTERIOPHAGE TRANSCRIPTIONAL ACTIVATOR-RELATED TRANSCRIPTION REGULATOR PROTEIN2e-0754.7
NC_007347:2421942:242324224232422423535294Ralstonia eutropha JMP134 chromosome 1, complete sequencePhage transcriptional activator, Ogr/Delta2e-0754.3
NC_012724:359444:384459384459384707249Burkholderia glumae BGR1 chromosome 1, complete genomePhage transcriptional activator, Ogr/delta7e-0752.8
NC_014121:1101093:111670611167061116846141Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein7e-0752.8
NC_014323:961825:974612974612974872261Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription activator transcription regulator protein5e-0649.7