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Query: NC_011147:2676972:2689009 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2689009, End: 2689251, Length: 243

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-42170
NC_003198:4453457:450525045052504505492243Salmonella enterica subsp. enterica serovar Typhi str. CT18,phage regulatory protein1e-41167
NC_006511:2677964:269347326934732693715243Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCphage regulatory protein1e-41167
NC_011742:2823000:282897328289732829215243Escherichia coli S88 chromosome, complete genomephage regulatory protein5e-41166
NC_011149:2802199:281881728188172819056240Salmonella enterica subsp. enterica serovar Agona str. SL483,phage regulatory protein7e-41165
NC_003197:2870268:287582328758232876062240Salmonella typhimurium LT2, complete genomehypothetical protein7e-41165
NC_011205:2938356:295401029540102954249240Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage regulatory protein7e-41165
NC_016860:2896254:289938928993892899628240Salmonella enterica subsp. enterica serovar Typhimurium strphage regulatory protein7e-41165
NC_016810:2871689:288649528864952886743249Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage regulatory protein3e-24110
NC_017046:2869873:288523728852372885452216Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage regulatory protein2e-1891.3
NC_016857:2871689:288649528864952886710216Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage regulatory protein2e-1891.3
NC_014306:1244721:124976512497651250019255Erwinia billingiae Eb661, complete genomePhage regulatory protein7e-0752.8
NC_015061:596247:612283612283612543261Rahnella sp. Y9602 chromosome, complete genomeprophage excisionase3e-0650.8