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Query: NC_011147:2676972:2688259 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2688259, End: 2688459, Length: 201

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2677964:269272326927232692923201Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein5e-32135
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,9e-32135
NC_003198:4453457:450450045045004504700201Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-31133
NC_009436:1466580:147905014790501479250201Enterobacter sp. 638, complete genomehypothetical protein2e-26117
NC_020260:312805:320497320497320697201Cronobacter sakazakii Sp291, complete genomehypothetical protein3e-26116
NC_011601:846358:857568857568857768201Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein6e-26115
NC_016810:2871689:288531228853122885608297Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage protein5e-23106
NC_010694:614985:630810630810631010201Erwinia tasmaniensis, complete genomehypothetical protein2e-22104
NC_011742:2823000:282812728281272828453327Escherichia coli S88 chromosome, complete genomehypothetical protein2e-2097.4
NC_009436:3807420:381175038117503811950201Enterobacter sp. 638, complete genomehypothetical protein6e-2095.9
NC_017046:2869873:288405428840542884200147Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein2e-1580.9
NC_013282:3389619:340394834039483404139192Cronobacter turicensis, complete genomeProtein fil8e-1372.4
NC_016860:2896254:289860328986032898836234Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-1167.4
NC_003197:2870268:287503728750372875270234Salmonella typhimurium LT2, complete genomehypothetical protein2e-1167.4
NC_013956:3525711:354209535420953542274180Pantoea ananatis LMG 20103 chromosome, complete genomeFil7e-0959.3
NC_016845:4046142:405284940528494052995147Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein5e-0856.6
NC_014837:3766426:378094637809463781098153Pantoea sp. At-9b chromosome, complete genome2e-0754.7