Pre_GI: BLASTP Hits

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Query: NC_011147:2676972:2682994 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2682994, End: 2683227, Length: 234

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-40164
NC_006511:2677964:268745826874582687691234Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-38156
NC_017046:2869873:287938228793822879615234Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage sos operon Tum protein2e-37154
NC_016857:2871689:288064028806402880873234Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Prophage protein2e-37154
NC_016810:2871689:288064028806402880873234Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage sos operon Tum protein2e-37154
NC_020260:312805:326018326018326251234Cronobacter sakazakii Sp291, complete genomedinI-like protein in retron EC672e-37154
NC_011149:2802199:281269128126912812924234Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-35148
NC_007613:761234:769189769189769494306Shigella boydii Sb227, complete genomeputative damage-inducible protein2e-34144
NC_011742:2823000:282326328232632823568306Escherichia coli S88 chromosome, complete genomeDinI-like damage-inducible protein2e-34144
NC_016845:1773416:178164517816451781878234Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative DinI-like damage-inducible protein5e-34142
NC_012947:2898179:290549729054972905730234Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeDinI family protein5e-34142
NC_011601:846358:862220862220862453234Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-damage-inducible protein5e-34142
NC_009648:3803622:382864238286423829124483Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage protein2e-1580.9
NC_006856:95830:100618100618100866249Salmonella enterica subsp. enterica serovar Choleraesuis strImpC7e-1372.4
NC_007941:11319:562635626356511249Escherichia coli UTI89 plasmid pUTI89, complete sequenceUV protection and mutation protein8e-1268.9
NC_016612:3314846:333081733308173331050234Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein1e-0961.6
NC_011283:3379181:341354834135483413781234Klebsiella pneumoniae 342 chromosome, complete genomeDinI family protein9e-0958.9
NC_012912:1788308:183736018373601837602243Dickeya zeae Ech1591, complete genomeDinI family protein2e-0857.8
NC_017046:2756000:276260027626002762833234Salmonella enterica subsp. enterica serovar Typhimurium str. 798damage-inducible protein3e-0857.4
NC_016856:2812905:281706928170692817302234Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-0857.4
NC_011080:2761403:276556727655672765800234Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein3e-0857.4
NC_015761:1017301:101823310182331018466234Salmonella bongori NCTC 12419, complete genomephage damage-inducible protein3e-0857
NC_020181:2097066:210660421066042106837234Enterobacter aerogenes EA1509E, complete genomeDNA-damage-inducible protein I5e-0856.6
NC_009792:1770106:177874917787491778994246Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0754.7
NC_010694:614985:63489963489963498587Erwinia tasmaniensis, complete genomepeptide leader protein2e-0754.7
NC_016612:3803130:382038438203843820617234Klebsiella oxytoca KCTC 1686 chromosome, complete genomeDinI family protein2e-0754.3
NC_004088:1909880:192842819284281928673246Yersinia pestis KIM, complete genomedamage-inducible protein I2e-0754.3
NC_010159:409500:415927415927416172246Yersinia pestis Angola, complete genomeDNA-damage-inducible protein I2e-0754.3
NC_008150:2173708:217506721750672175312246Yersinia pestis Antiqua, complete genomeDNA-damage-inducible protein I2e-0754.3
NC_005810:2508671:251447525144752514720246Yersinia pestis biovar Microtus str. 91001, complete genomeDNA damage-inducible protein I2e-0754.3
NC_020211:2012480:204033420403342040573240Serratia marcescens WW4, complete genomeDNA damage-inducible protein I1e-0652