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Query: NC_011147:2676972:2681606 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2681606, End: 2682670, Length: 1065

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4453457:4497835449783544988991065Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein0731
NC_006511:2677964:2686070268607026871341065Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein0731
NC_008542:197500:217031217031217984954Burkholderia cenocepacia HI2424 chromosome 1, complete sequencehypothetical protein6e-37155
NC_015572:1:697469747948975Methylomonas methanica MC09 chromosome, complete genomehypothetical protein1e-36154
NC_013858:416000:431791431791432783993Azospirillum sp. B510 plasmid pAB510d, complete sequencehypothetical protein2e-36153
NC_005966:2157677:2163033216303321640491017Acinetobacter sp. ADP1, complete genomehypothetical protein7e-36151
NC_020126:4084114:409752440975244098513990Myxococcus stipitatus DSM 14675, complete genomehypothetical protein4e-35149
NC_009667:1203861:1221853122185312230641212Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencehypothetical protein7e-29128
NC_015061:1598920:1609202160920216102931092Rahnella sp. Y9602 chromosome, complete genomehypothetical protein4e-28125