Pre_GI: BLASTP Hits

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Query: NC_011147:2676972:2680545 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2680545, End: 2681609, Length: 1065

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020126:4084114:4096362409636240975311170Myxococcus stipitatus DSM 14675, complete genomehypothetical protein1e-1894.4
NC_015572:1:7945794590841140Methylomonas methanica MC09 chromosome, complete genomehypothetical protein2e-20100
NC_009667:1203861:1223054122305412241841131Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencehypothetical protein2e-1273.9
NC_003198:4453457:4496774449677444978381065Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein0721
NC_008542:197500:2158862158862170341149Burkholderia cenocepacia HI2424 chromosome 1, complete sequencehypothetical protein2e-1687.4
NC_006511:2677964:2685009268500926860731065Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein0723
NC_013858:416000:4327804327804339191140Azospirillum sp. B510 plasmid pAB510d, complete sequencehypothetical protein6e-1892