Pre_GI: BLASTP Hits

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Query: NC_011147:2496808:2517430 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2517430, End: 2517714, Length: 285

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:364981:372938372938373222285Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein6e-50195
NC_006511:2501500:252189425218942522178285Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-50195
NC_010067:2529750:259305525930552593339285Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-48190
NC_011283:4212000:422563242256324225937306Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein3e-1270.9