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Query: NC_011147:2496808:2516852 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2516852, End: 2517430, Length: 579

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:252131625213162521894579Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-111399
NC_016860:364981:373222373222373929708Salmonella enterica subsp. enterica serovar Typhimurium strgp493e-109393
NC_011205:609464:623435623435624142708Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853gp492e-108391
NC_010067:2529750:259234825923482593055708Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-102370
NC_012125:1330066:134132513413251342032708Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein3e-101367
NC_006905:368942:379873379873380580708Salmonella enterica subsp. enterica serovar Choleraesuis strOrf-235-like protein3e-101367
NC_011601:1039500:104778010477801048487708Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerecombination protein5e-101366
NC_011601:2614691:262472926247292625436708Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein4e-100363
NC_011601:717072:726497726497727204708Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerecombination protein4e-100363
NC_011083:374000:382124382124382741618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,essential recombination function protein6e-25113
NC_007964:328825:353870353870354598729Nitrobacter hamburgensis X14, complete genomehypothetical protein8e-1167
NC_020054:4028444:404693140469314047455525Fibrella aestuarina BUZ 2 drat genomehypothetical protein2e-0962.4
NC_020054:4983691:499801749980174998535519Fibrella aestuarina BUZ 2 drat genomehypothetical protein3e-0961.6
NC_011283:4212000:422470842247084225361654Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein4e-0857.8