Pre_GI: BLASTP Hits

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Query: NC_011147:2496808:2514632 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2514632, End: 2515219, Length: 588

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:251909625190962519683588Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCsuperinfection exclusion1e-104378
NC_016860:364981:376518376518377105588Salmonella enterica subsp. enterica serovar Typhimurium strsuperinfection exclusion protein B8e-92335
NC_011083:374000:384655384655385206552Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,superinfection exclusion protein B1e-87322
NC_011751:1405381:141681614168161417397582Escherichia coli UMN026 chromosome, complete genomeSuperinfection exclusion protein B8e-85312
NC_011742:1177946:118860511886051189186582Escherichia coli S88 chromosome, complete genomeSuperinfection exclusion protein B1e-82305
NC_007946:1239278:124762912476291248210582Escherichia coli UTI89, complete genomeputative superinfection exclusion protein B of prophage1e-82305
NC_008563:1175035:118501711850171185598582Escherichia coli APEC O1, complete genomeputative superinfection exclusion protein B of prophage1e-82305
NC_004431:1401681:140977414097741410355582Escherichia coli CFT073, complete genomePutative superinfection exclusion protein B of prophage3e-82304