Pre_GI: BLASTP Hits

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Query: NC_011147:2496808:2511695 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2511695, End: 2511976, Length: 282

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:251615925161592516440282Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtranscriptional activator-regulatory protein4e-48189
NC_016860:364981:380396380396380677282Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional activator-regulatory protein1e-47187
NC_010067:2529750:258673025867302587008279Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-24111
NC_013361:3287671:329436532943653294643279Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage regulatory protein CII1e-2098.2
NC_011083:374000:386906386906387184279Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional activator protein C16e-2096.3
NC_002655:301940:303073303073303366294Escherichia coli O157:H7 EDL933, complete genomeputative cII antiterminator protein for prophage CP-933H1e-1788.2
NC_002695:301939:303072303072303365294Escherichia coli O157:H7 str. Sakai, complete genomecII1e-1788.2
NC_013008:306953:306953306953307246294Escherichia coli O157:H7 str. TW14359 chromosome, complete genomecII antiterminator protein for prophage CP-933H1e-1788.2
NC_007946:2625461:262931726293172629610294Escherichia coli UTI89, complete genomebacteriophage 343 regulatory protein CII2e-1787.8
NC_009778:2993218:301567830156783015956279Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1685.5
NC_013850:1887556:190106119010611901360300Klebsiella variicola At-22 chromosome, complete genomeCII family protein4e-1683.2
NC_011205:609464:628765628765628884120Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transcriptional activator-regulatory protein1e-1478.2
NC_011094:593100:610894610894611013120Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional activator-regulatory protein1e-1478.2