Pre_GI: BLASTP Hits

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Query: NC_011147:2496808:2507400 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2507400, End: 2507576, Length: 177

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016860:364981:383968383968384144177Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-27120
NC_006511:2501500:251186425118642512040177Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein3e-27120
NC_011601:717072:735508735508735690183Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeprotein NinE2e-26117
NC_013361:1558423:157576615757661575948183Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein7e-26115
NC_007946:2625461:262581126258112625987177Escherichia coli UTI89, complete genomebacteriophage lambda nin 60-like protein8e-26115
NC_011601:2614691:261505326150532615229177Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeprotein NinE9e-26115
NC_013364:2645438:264674126467412646923183Escherichia coli O111:H- str. 11128, complete genomeputative NinE protein2e-25114
NC_013008:3231414:323141432314143231608195Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeNinE protein2e-25114
NC_009800:289000:305919305919306095177Escherichia coli HS, complete genomeNINE Protein6e-25112
NC_013361:3112023:312578131257813125963183Escherichia coli O26:H11 str. 11368 chromosome, complete genomeNinE protein1e-24112
NC_007946:1239278:125465812546581254834177Escherichia coli UTI89, complete genomeNinE protein (phage 82- and lambda-like) proteins1e-24111
NC_011601:1039500:105650010565001056682183Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeprotein NinE9e-24108
NC_013941:975353:993023993023993265243Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeNinE protein3e-22103
NC_013850:1887556:190792019079201908099180Klebsiella variicola At-22 chromosome, complete genomeNINE family protein1e-1478.6
NC_017328:303987:322386322386322562177Shigella flexneri 2002017 chromosome, complete genomeNinE protein8e-1062.4