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Query: NC_011147:2496808:2506887 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2506887, End: 2507063, Length: 177

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:251135125113512511527177Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein9e-27118
NC_008258:269806:293591293591293821231Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-26118
NC_009800:289000:306457306457306633177Escherichia coli HS, complete genomehypothetical protein2e-26117
NC_016860:364981:384481384481384657177Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-26117
NC_011083:374000:390698390698390874177Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein2e-25114
NC_011740:2072173:210463921046392104818180Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein from phage origin1e-25114
NC_011601:1039500:105667910566791056849171Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeprotein NinF3e-21100
NC_017328:303987:322559322559322729171Shigella flexneri 2002017 chromosome, complete genomeGp647e-2095.9
NC_013364:2645438:264657426465742646744171Escherichia coli O111:H- str. 11128, complete genomeputative NinF protein2e-1994.4
NC_013941:975353:993220993220993432213Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeNinF protein2e-1994
NC_011601:717072:735687735687735866180Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeprotein NinF8e-0959.3