Pre_GI: BLASTP Hits

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Query: NC_011147:2496808:2506399 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2506399, End: 2506689, Length: 291

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:1465500:147697414769741477264291Salmonella enterica subsp. enterica serovar Enteritidis strbacteriophage protein8e-23105
NC_012214:1974500:198673219867321987211480Erwinia pyrifoliae Ep1/96, complete genomeconserved bacteriophage protein5e-28123
NC_011740:2769961:278046827804682780758291Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein; DLP12 prophage4e-32136
NC_011748:824367:835174835174835464291Escherichia coli 55989, complete genomeconserved hypothetical protein; DLP12 prophage2e-32137
CU928145:824367:835174835174835464291Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; DLP12 prophage2e-32137
NC_012759:461680:475067475067475357291Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage protein1e-32138
NC_010473:498252:511639511639511929291Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted protein1e-32138
NC_000913:558920:572307572307572597291Escherichia coli K12, complete genomeDLP12 prophage; predicted protein1e-32138
NC_017328:303987:323444323444323734291Shigella flexneri 2002017 chromosome, complete genomeGp663e-49193
NC_012967:531000:544974544974545264291Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-33140
NC_011353:2957962:296581129658112966101291Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-32138
NC_011751:643976:659972659972660262291Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-31134
NC_011415:1472500:149358814935881493878291Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-24112
NC_009801:2193000:219926521992652199558294Escherichia coli E24377A, complete genomehypothetical protein7e-24109
NC_009800:289000:306895306895307185291Escherichia coli HS, complete genomehypothetical protein8e-51198
NC_013008:2910567:292068229206822920972291Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-32138
NC_011283:2836000:290151429015142901894381Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein7e-28122
NC_011415:2277559:228569022856902285983294Escherichia coli SE11 chromosome, complete genomehypothetical protein7e-24109
NC_012779:1939747:195321119532111953513303Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-0960.1
NC_011601:1039500:105756410575641057854291Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein8e-51198
NC_013941:699286:712430712430712720291Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-32138
NC_002695:1929215:193958719395871939877291Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-24110
NC_016902:2580774:258853025885302588820291Escherichia coli KO11FL chromosome, complete genomehypothetical protein1e-23108
NC_006511:2501500:251086325108632511153291Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-51200
NC_011601:717072:736774736774737064291Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein5e-48189
NC_012947:3231893:324041532404153240705291Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-33140
AC_000091:558920:572307572307572597291Escherichia coli W3110 DNA, complete genomehypothetical protein1e-32138
NC_009655:1357486:137354013735401373830291Actinobacillus succinogenes 130Z chromosome, complete genomehypothetical protein2e-32137
NC_017986:4885979:491019549101954910494300Pseudomonas putida ND6 chromosome, complete genomehypothetical protein9e-32135
NC_017033:1557981:157359415735941573941348Frateuria aurantia DSM 6220 chromosome, complete genomehypothetical protein1e-23108
NC_017033:1052000:107013210701321070419288Frateuria aurantia DSM 6220 chromosome, complete genomehypothetical protein2e-1581.3
NC_010554:539122:541061541061541351291Proteus mirabilis HI4320, complete genomephage protein8e-34142
NC_020063:2565605:257500225750022575292291Enterobacteriaceae bacterium strain FGI 57, complete genomeProtein of unknown function (DUF1364)9e-32135
CP002516:2580774:258853025885302588820291Escherichia coli KO11, complete genomeprotein of unknown function DUF13641e-23108
NC_013850:1887556:190826119082611908551291Klebsiella variicola At-22 chromosome, complete genomeprotein of unknown function DUF13643e-44176
NC_012912:2553391:255928425592842559547264Dickeya zeae Ech1591, complete genomeprotein of unknown function DUF13642e-1064.3
NC_013850:2182337:220631022063102206612303Klebsiella variicola At-22 chromosome, complete genomeprotein of unknown function DUF13641e-28125
NC_016514:2387312:239486523948652395155291Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YbcO1e-31134
NC_003198:1908238:191593819159381916228291Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative bacteriophage protein2e-24110