Pre_GI: BLASTP Hits

Some Help

Query: NC_011147:2496808:2506040 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2506040, End: 2506402, Length: 363

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:251050425105042510866363Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-64243
NC_009800:289000:307182307182307544363Escherichia coli HS, complete genomecrossover junction endodeoxyribonuclease RusA3e-62236
NC_017328:303987:323731323731324093363Shigella flexneri 2002017 chromosome, complete genomeHoliday-junction resolvase6e-62235
NC_011601:1039500:105785110578511058213363Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomecrossover junction endodeoxyribonuclease9e-62234
NC_008258:269806:294823294823295185363Shigella flexneri 5 str. 8401, complete genomeputative crossover junction endodeoxyribonuclease9e-62234
NC_009801:1419324:143291514329151433274360Escherichia coli E24377A, complete genomecrossover junction endodeoxyribonuclease RusA homolog4e-40163
NC_008258:1934479:193859419385941938953360Shigella flexneri 5 str. 8401, complete genomeputative endonuclease encoded by cryptic prophage6e-40162
NC_008258:2045000:206238520623852062750366Shigella flexneri 5 str. 8401, complete genomeputative endonuclease encoded by cryptic prophage1e-38158
NC_020260:1615135:163064816306481631010363Cronobacter sakazakii Sp291, complete genomehypothetical protein4e-38156
NC_013361:1754346:175398417539841754349366Escherichia coli O26:H11 str. 11368 chromosome, complete genomeholliday junction resolvase3e-38156
NC_011601:1269500:128456112845611284926366Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomecrossover junction endodeoxyribonuclease1e-37155
NC_016822:3065426:306824230682423068613372Shigella sonnei 53G, complete genomeendonuclease9e-37151
NC_007384:2933625:293693829369382937309372Shigella sonnei Ss046, complete genomeputative endonuclease9e-37151
NC_009778:1556222:157174015717401572102363Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-36150
NC_011748:1773642:178743817874381787815378Escherichia coli 55989, complete genomeputative crossover junction endodeoxyribonuclease rusA (Holliday junction nuclease rusA) (Holliday juction resolvase) (Gp67)8e-35145
CU928145:1773642:178743817874381787815378Escherichia coli 55989 chromosome, complete genomeputative crossover junction endodeoxyribonuclease rusA (Holliday junction nuclease rusA) (Holliday juction resolvase) (Gp67)8e-35145
NC_013364:1596278:161370916137091614083375Escherichia coli O111:H- str. 11128, complete genomeputative holliday junction resolvase2e-34144
NC_007384:1320287:133818613381861338560375Shigella sonnei Ss046, complete genomeputative crossover junction endodeoxyribonuclease1e-34144
NC_016822:1304398:132180413218041322178375Shigella sonnei 53G, complete genomecrossover junction endodeoxyribonuclease1e-34144
NC_011748:1408280:142231514223151422674360Escherichia coli 55989, complete genomeputative crossover junction endodeoxyribonuclease rusA (Holliday junction nuclease rusA) (Holliday juction resolvase) (Gp67)1e-34144
CU928145:1408280:142231514223151422674360Escherichia coli 55989 chromosome, complete genomeputative crossover junction endodeoxyribonuclease rusA (Holliday junction nuclease rusA) (Holliday juction resolvase) (Gp67)1e-34144
NC_013282:1200993:122183812218381222233396Cronobacter turicensis, complete genomeCrossover junction endodeoxyribonuclease rusA2e-27120
NC_006905:368942:389632389632390027396Salmonella enterica subsp. enterica serovar Choleraesuis strRus2e-26117
NC_012125:1330066:135090713509071351302396Salmonella enterica subsp. enterica serovar Paratyphi C strainendodeoxyribonuclease RUS2e-26117
NC_007712:1219957:124588312458831246242360Sodalis glossinidius str. 'morsitans', complete genomeputative phage endonuclease4e-26116
NC_013850:1887556:190854819085481908943396Klebsiella variicola At-22 chromosome, complete genomeCrossover junction endodeoxyribonuclease4e-25113
NC_011353:2957962:296545229654522965814363Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeendodeoxyribonuclease RUS1e-21102
NC_010473:498252:511926511926512288363Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; endonuclease RUS1e-21102
NC_004431:1401681:141885014188501419212363Escherichia coli CFT073, complete genomeCrossover junction endodeoxyribonuclease rusA1e-21102
NC_008563:1175035:119277211927721193134363Escherichia coli APEC O1, complete genomeendonuclease RUS1e-21102
NC_007946:1239278:125538512553851255747363Escherichia coli UTI89, complete genomeCrossover junction endodeoxyribonuclease RusA1e-21102
NC_000913:558920:572594572594572956363Escherichia coli K12, complete genomeDLP12 prophage; endonuclease RUS1e-21102
AC_000091:558920:572594572594572956363Escherichia coli W3110 DNA, complete genomeendonuclease RUS1e-21102
NC_011742:1177946:119629411962941196656363Escherichia coli S88 chromosome, complete genomeendodeoxyribonuclease RUS1e-21102
NC_012759:461680:475354475354475716363Escherichia coli BW2952 chromosome, complete genomeendodeoxyribonuclease RUS1e-21102
NC_020063:2565605:257464325746432575005363Enterobacteriaceae bacterium strain FGI 57, complete genomeholliday junction resolvase5e-22102
NC_015663:4522109:453090345309034531268366Enterobacter aerogenes KCTC 2190 chromosome, complete genomeendodeoxyribonuclease RUS5e-22102
NC_011740:2769961:278010927801092780471363Escherichia fergusonii ATCC 35469, complete genomeendonuclease RUS; DLP12 prophage6e-22102
NC_011751:643976:660259660259660621363Escherichia coli UMN026 chromosome, complete genomeendodeoxyribonuclease RUS9e-22102
NC_011751:1405381:142429214242921424654363Escherichia coli UMN026 chromosome, complete genomeendodeoxyribonuclease RUS9e-22102
NC_013941:699286:712717712717713079363Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCrossover junction endodeoxyribonuclease rusA1e-21102
NC_013008:2910567:292032329203232920685363Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeendodeoxyribonuclease RUS1e-21102
NC_015663:4767443:477570747757074776072366Enterobacter aerogenes KCTC 2190 chromosome, complete genomeendodeoxyribonuclease RUS3e-21100
NC_012947:3231893:324005632400563240418363Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeendodeoxyribonuclease RUS2e-21100
NC_012967:531000:545261545261545623363Escherichia coli B str. REL606 chromosome, complete genomeendodeoxyribonuclease RUS2e-21100
NC_016514:2387312:239450623945062394868363Enterobacter cloacae EcWSU1 chromosome, complete genomeCrossover junction endodeoxyribonuclease rusA2e-21100
NC_012731:2083650:210511521051152105513399Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomebacteriophage V crossover junction endodeoxyribonuclease3e-1684
NC_013941:5317424:531982953198295320224396Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHolliday junction resolvase7e-1682.4
NC_007946:2931364:293097829309782931367390Escherichia coli UTI89, complete genomebacteriophage V crossover junction endodeoxyribonuclease1e-1581.6
NC_011740:4520373:452247645224764522865390Escherichia fergusonii ATCC 35469, complete genomeCrossover junction endodeoxyribonuclease1e-1581.6
NC_008563:2946391:294600529460052946394390Escherichia coli APEC O1, complete genomebacteriophage V crossover junction endodeoxyribonuclease1e-1581.6
NC_011742:2863316:286331628633162863705390Escherichia coli S88 chromosome, complete genomeCrossover junction endodeoxyribonuclease1e-1581.6
NC_011750:5045927:506529650652965065685390Escherichia coli IAI39 chromosome, complete genomeCrossover junction endodeoxyribonuclease2e-1581.3
NC_011742:4962008:496500949650094965398390Escherichia coli S88 chromosome, complete genomeCrossover junction endodeoxyribonuclease from phage origin2e-1580.9
NC_008563:5011997:501499850149985015387390Escherichia coli APEC O1, complete genomebacteriophage V crossover junction endodeoxyribonuclease2e-1580.9
NC_004431:3040953:305585730558573056246390Escherichia coli CFT073, complete genomehypothetical protein5e-1579.7
NC_009655:1357486:137382713738271374192366Actinobacillus succinogenes 130Z chromosome, complete genomeendodeoxyribonuclease RusA8e-1475.9
NC_017047:1906000:191091619109161911290375Rahnella aquatilis HX2 chromosome, complete genomeendodeoxyribonuclease RusA1e-1375.5
NC_009053:553298:572506572506572874369Actinobacillus pleuropneumoniae L20, complete genomepredicted Endodeoxyribonuclease RusA4e-1373.6
NC_013282:1804909:182027018202701820659390Cronobacter turicensis, complete genomeCrossover junction endodeoxyribonuclease rusA6e-1372.8
NC_014838:218000:235514235514235879366Pantoea sp. At-9b plasmid pPAT9B01, complete sequenceendodeoxyribonuclease RusA1e-1272
NC_009778:959982:981951981951982334384Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-1270.5
CU928145:824367:835595835595835822228Escherichia coli 55989 chromosome, complete genomefragment of endonuclease RUS; DLP12 prophage (partial)1e-0962
NC_011748:824367:835595835595835822228Escherichia coli 55989, complete genome1e-0962
NC_012751:899394:903962903962904237276Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeendonuclease RUS1e-0755.1