Pre_GI: BLASTP Hits

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Query: NC_011147:2496808:2505855 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2505855, End: 2506043, Length: 189

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:251031925103192510507189Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-29127
NC_009800:289000:307541307541307729189Escherichia coli HS, complete genomephage NinH protein2e-29127
NC_017328:303987:324090324090324278189Shigella flexneri 2002017 chromosome, complete genomeGp683e-28123
NC_013850:1887556:190894019089401909137198Klebsiella variicola At-22 chromosome, complete genomeNinH family protein3e-1684
NC_016860:364981:385479385479385682204Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-1477.8
NC_011083:374000:391696391696391899204Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein3e-1477
NC_013364:3312379:333294533329453333139195Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-1374.3
NC_014306:3524980:356314135631413563347207Erwinia billingiae Eb661, complete genomephage NinH protein4e-1373.6
NC_013361:3287671:328893432889343289140207Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-1271.6
NC_012759:4132527:414864141486414148847207Escherichia coli BW2952 chromosome, complete genomeProtein ninH1e-1271.6
NC_011740:2072173:210345021034502103656207Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein, Protein ninH from phage origin1e-1271.6
NC_012125:1330066:135132913513291351502174Salmonella enterica subsp. enterica serovar Paratyphi C strainNinH2e-1064.3
NC_013282:1200993:122288912228891223080192Cronobacter turicensis, complete genomeProtein ninH6e-0856.2