Pre_GI: BLASTP Hits

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Query: NC_011147:2496808:2502852 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2502852, End: 2503373, Length: 522

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:250731625073162507837522Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein1e-99361
CU928145:824367:839640839640840161522Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein from phage origin6e-85312
NC_011748:824367:839640839640840161522Escherichia coli 55989, complete genomeconserved hypothetical protein from phage origin6e-85312
NC_015740:2614317:263269526326952633267573Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeKilA domain-containing protein3e-1994.4
NC_015144:124500:127052127052127825774Weeksella virosa DSM 16922 chromosome, complete genomeKilA, /APSES-type HTH DNA-binding domain protein3e-1064.3
NC_007298:2689731:270554827055482705934387Dechloromonas aromatica RCB, complete genomehypothetical protein2e-0858.9
NC_011094:593100:619506619506620003498Salmonella enterica subsp. enterica serovar Schwarzengrund strKilA-N domain family protein2e-0858.5