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Query: NC_011147:2496808:2499910 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2499910, End: 2501409, Length: 1500

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010067:2529750:2576355257635525778541500Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein0964
NC_011740:2072173:2096748209674820982471500Escherichia fergusonii ATCC 35469, complete genomeDNA packaging protein gp2 (Terminase large subunit)0908
NC_012587:1181004:1194309119430911955591251Rhizobium sp. NGR234, complete genomeDNA packaging protein Gp26e-113408
NC_019907:845663:8623448623448636931350Liberibacter crescens BT-1 chromosome, complete genomeDNA packaging protein gp24e-103375
NC_020418:3102460:3125759312575931271951437Morganella morganii subsp. morganii KT, complete genomehypothetical protein8e-103374
NC_009511:4882047:488774448877444888574831Sphingomonas wittichii RW1 chromosome, complete genomehypothetical protein1e-66254
NC_009511:4882047:488535048853504886027678Sphingomonas wittichii RW1 chromosome, complete genomebacteriophage terminase large (ATPase) subunit-like protein7e-52205
NC_015577:427752:4520734520734532961224Treponema azotonutricium ZAS-9 chromosome, complete genomephage terminase, large subunit, PBSX family1e-0862
NC_015577:1392390:1392390139239013936131224Treponema azotonutricium ZAS-9 chromosome, complete genomephage terminase, large subunit, PBSX family1e-0758.2
NC_015437:1494777:1501104150110415023541251Selenomonas sputigena ATCC 35185 chromosome, complete genomephage terminase, large subunit, PBSX family1e-0655.1