Pre_GI: BLASTP Hits

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Query: NC_011147:2496808:2497733 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 2497733, End: 2499736, Length: 2004

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:2501500:2502197250219725042002004Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCportal protein01355
NC_010067:2529750:2574178257417825763552178Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein01340
NC_011740:2072173:2094582209458220967472166Escherichia fergusonii ATCC 35469, complete genomePortal protein (Protein gp1)01020
NC_020418:3102460:3123672312367231257592088Morganella morganii subsp. morganii KT, complete genomehypothetical protein0768
NC_007946:2593500:2616001261600126181992199Escherichia coli UTI89, complete genomeportal protein2e-98360
CU928145:2655989:2684269268426926864672199Escherichia coli 55989 chromosome, complete genomeportal protein p192e-71270
NC_011748:2655989:2684269268426926864672199Escherichia coli 55989, complete genomeportal protein p192e-71270
NC_007794:3218729:3219642321964232217142073Novosphingobium aromaticivorans DSM 12444, complete genomehypothetical protein1e-44181
NC_009256:1253384:1269188126918812713622175Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein4e-29130
NC_010682:2422500:2422509242250924246382130Ralstonia pickettii 12J chromosome 1, complete sequencehypothetical protein2e-26121
NC_012808:4078459:4086461408646140886622202Methylobacterium extorquens AM1, complete genomehypothetical protein5e-26120
NC_009511:4882047:4890161489016148921792019Sphingomonas wittichii RW1 chromosome, complete genomehypothetical protein6e-1893.2