Pre_GI: BLASTP Hits

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Query: NC_011147:1650142:1667154 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1667154, End: 1667426, Length: 273

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011080:1321268:132902013290201329178159Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein4e-1993.6
NC_016832:1182496:119064711906471190775129Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein1e-1685.1
NC_011094:1282385:129117412911741291335162Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein3e-1684
NC_016856:1326503:133721413372141337372159Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein7e-1682.4
NC_010102:1779707:179483117948311794989159Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-1682.4
NC_011149:1870931:188650518865051886654150Salmonella enterica subsp. enterica serovar Agona str. SL483,putative inner membrane protein2e-1581.3
NC_011147:1802535:181564518156451815965321Salmonella enterica subsp. enterica serovar Paratyphi A strinner membrane protein4e-1476.6
NC_006511:1808815:182046218204621820782321Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative inner membrane protein4e-1476.6
NC_012125:2687980:269740526974052697731327Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein6e-1476.3
NC_016810:1126693:113385911338591134185327Salmonella enterica subsp. enterica serovar Typhimurium strinner membrane protein3e-1373.6
NC_016863:1128381:113517811351781135498321Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein4e-1373.6
NC_016857:1126693:113386511338651134185321Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein4e-1373.6
NC_016856:1128715:113588711358871136207321Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein4e-1373.6
NC_003197:1170746:117754311775431177863321Salmonella typhimurium LT2, complete genomeputative inner membrane protein4e-1373.6
NC_011205:1147556:115608211560821156360279Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853inner membrane protein4e-1373.6
NC_011083:1173802:118231011823101182588279Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative inner membrane protein4e-1373.6
NC_010102:2020762:203017620301762030454279Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-1373.6