Pre_GI: BLASTP Hits

Some Help

Query: NC_011147:1239904:1258928 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1258928, End: 1259152, Length: 225

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:1243817:126508512650851265309225Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCphage shock protein B3e-28123
NC_009792:1345500:134639313463931346617225Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-26117
NC_020063:2480983:248586524858652486089225Enterobacteriaceae bacterium strain FGI 57, complete genomephage shock protein B3e-23107