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Query: NC_011147:1239904:1253003 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1253003, End: 1253362, Length: 360

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:1243817:125909412590941259519426Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical periplasmic protein1e-66251
NC_015761:1181186:119198911919891192396408Salmonella bongori NCTC 12419, complete genomepertussis-like toxin subunit3e-0960.5
NC_006511:1654959:167091516709151671328414Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative pertussis-like toxin subunit5e-0959.7
NC_011147:1650142:166609816660981666511414Salmonella enterica subsp. enterica serovar Paratyphi A strpertussis-like toxin subunit5e-0959.7
NC_004631:1182883:119244511924451192858414Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative pertussis-like toxin subunit5e-0959.7
NC_003198:1771432:178827417882741788687414Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative pertussis-like toxin subunit5e-0959.7
NC_005810:515744:525941525941526366426Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein1e-0858.5
NC_008149:3790897:380029338002933800718426Yersinia pestis Nepal516, complete genomehypothetical protein1e-0858.5
NC_010465:4222586:422923242292324229657426Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein1e-0858.5
NC_006155:456000:466490466490466915426Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-0858.5
NC_009708:4215500:422531642253164225741426Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein1e-0858.5
NC_014029:331919:341301341301341726426Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-0858.5
NC_017154:331921:341304341304341729426Yersinia pestis D106004 chromosome, complete genomehypothetical protein1e-0858.5
NC_017168:751078:760474760474760899426Yersinia pestis A1122 chromosome, complete genomesubtilase cytotoxin subunit B-like protein1e-0858.5
NC_017265:644384:651610651610652035426Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein1e-0858.5
NC_010067:2304313:231678823167882317243456Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-0856.6