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Query: NC_011147:1239904:1250739 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1250739, End: 1251623, Length: 885

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:1243817:125689612568961257780885Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-173606
NC_004605:1385444:145309314530931453980888Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeputative OspB protein2e-62239
NC_013716:357928:364176364176365051876Citrobacter rodentium ICC168, complete genomeT3SS effector protein EspS4e-37155
NC_013353:3669500:371359537135953714470876Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector OspB-homolog9e-34144
AP010958:3669500:371359537135953714470876Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector OspB-homolog9e-34144
NC_013361:5319497:532970953297095330287579Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector OspB1e-1377.4