Pre_GI: BLASTP Hits

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Query: NC_011147:1239904:1246502 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1246502, End: 1247209, Length: 708

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:1243817:125265912526591253366708Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-137486
NC_009778:2227627:226306322630632263737675Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-37154
NC_015224:3225000:323007432300743230766693Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein2e-31135
NC_008800:1459015:147587614758761476574699Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein2e-31135
NC_017168:2626996:264815426481542648846693Yersinia pestis A1122 chromosome, complete genomehypothetical protein5e-30130
NC_017154:3188795:320995232099523210644693Yersinia pestis D106004 chromosome, complete genomeEAL domain-containing protein5e-30130
NC_014029:3245778:326690132669013267593693Yersinia pestis Z176003 chromosome, complete genomeEAL domain-containing protein5e-30130
NC_014121:4299500:431354843135484313928381Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-27121
NC_012214:2221702:222526222252622225993732Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein1e-26120
NC_013971:1660144:170306917030691703749681Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein2e-25115
NC_013961:1622616:166554216655421666222681Erwinia amylovora, complete genomeUncharacterized protein yhjH2e-25115
NC_009790:42112:547015470155381681Escherichia coli E24377A plasmid pETEC_74, complete sequenceEAL domain protein1e-24113
NC_014839:68308:803128031281052741Pantoea sp. At-9b plasmid pPAT9B02, complete sequencediguanylate phosphodiesterase1e-23110
NC_014839:253961:260806260806261333528Pantoea sp. At-9b plasmid pPAT9B02, complete sequencediguanylate phosphodiesterase4e-1995.1
NC_017047:3085000:309031630903163091044729Rahnella aquatilis HX2 chromosome, complete genomediguanylate phosphodiesterase1e-1893.2
NC_015061:3840463:390418039041803904866687Rahnella sp. Y9602 chromosome, complete genomediguanylate phosphodiesterase6e-1787.8
NC_017047:3936624:396582639658263966512687Rahnella aquatilis HX2 chromosome, complete genomediguanylate phosphodiesterase6e-1787.8
NC_016818:3887000:391482839148283915514687Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeEAL domain-containing protein8e-1787.4
NC_016822:1431200:144966614496661449974309Shigella sonnei 53G, complete genomehypothetical protein3e-1685.5
NC_012912:1229333:123645912364591237235777Dickeya zeae Ech1591, complete genomediguanylate phosphodiesterase1e-1583.6
NC_014500:2934232:295363029536302954364735Dickeya dadantii 3937 chromosome, complete genomehypothetical protein3e-1478.6
NC_012880:3241886:324976532497653250556792Dickeya dadantii Ech703, complete genomediguanylate phosphodiesterase3e-1272
NC_004337:3590323:364858036485803649347768Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-0962.4
NC_020211:1621000:164023716402371640953717Serratia marcescens WW4, complete genomediguanylate phosphodiesterase5e-0961.2
NC_020063:2011019:203290020329002033613714Enterobacteriaceae bacterium strain FGI 57, complete genomeEAL domain-containing protein1e-0653.5
NC_016863:1359769:138096413809641381677714Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein3e-0652.4
NC_016860:1399290:142048514204851421198714Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-0652.4
NC_016856:1411579:143277414327741433487714Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein3e-0652.4
NC_003197:1401603:142279814227981423511714Salmonella typhimurium LT2, complete genomehypothetical protein3e-0652.4
NC_008253:296500:318189318189318929741Escherichia coli 536, complete genomehypothetical protein3e-0652
NC_017046:1358531:137972613797261380439714Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein9e-0650.4
NC_016857:1358456:137965113796511380364714Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Cyclic di-GMP regulator CdgR9e-0650.4
NC_016810:1358456:137965113796511380364714Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein9e-0650.4