Pre_GI: BLASTP Hits

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Query: NC_011147:1057259:1059347 Salmonella enterica subsp. enterica serovar Paratyphi A str

Start: 1059347, End: 1060045, Length: 699

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006511:1063249:106533710653371066035699Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCexodeoxyribonuclease X4e-136483
NC_003197:1945858:197107219710721971770699Salmonella typhimurium LT2, complete genomeexodeoxyribonuclease X3e-135480
NC_012125:1897611:189969718996971900395699Salmonella enterica subsp. enterica serovar Paratyphi C strainexodeoxyribonuclease X3e-135480
NC_016810:1903426:192864019286401929338699Salmonella enterica subsp. enterica serovar Typhimurium strexodeoxyribonuclease X3e-135480
NC_016856:1957263:198247719824771983175699Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sexodeoxyribonuclease X3e-135480
NC_016857:1903426:192864019286401929338699Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74exodeoxyribonuclease X3e-135480
NC_016860:1943203:196661319666131967311699Salmonella enterica subsp. enterica serovar Typhimurium strexodeoxyribonuclease X3e-135480
NC_016863:1905454:193066819306681931366699Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1exodeoxyribonuclease X3e-135480
NC_017046:1902788:192800319280031928701699Salmonella enterica subsp. enterica serovar Typhimurium str. 798exodeoxyribonuclease X3e-135480
NC_011294:1220526:122261412226141223312699Salmonella enterica subsp. enterica serovar Enteritidis strexodeoxyribonuclease X6e-135479
NC_011094:1923870:194963319496331950331699Salmonella enterica subsp. enterica serovar Schwarzengrund strexodeoxyribonuclease X2e-134478
NC_011080:1944226:197669319766931977391699Salmonella enterica subsp. enterica serovar Newport str. SL254,exodeoxyribonuclease 102e-134478
NC_010102:1137247:113933511393351140033699Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-134478
NC_011205:1345511:134759913475991348297699Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853exodeoxyribonuclease X1e-134478
NC_016822:1339058:136436513643651365027663Shigella sonnei 53G, complete genomeexodeoxyribonuclease X4e-118424
NC_007384:1355060:138151613815161382178663Shigella sonnei Ss046, complete genomehypothetical protein4e-118424
NC_008258:1873805:189061318906131891275663Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-114412
NC_013850:1887556:189040318904031891062660Klebsiella variicola At-22 chromosome, complete genomeExonuclease RNase T and DNA polymerase III3e-109394
NC_016816:2073677:207573320757332076404672Pantoea ananatis LMG 5342, complete genomeexodeoxyribonuclease X6e-78290
NC_015567:2039443:204151020415102042178669Serratia sp. AS9 chromosome, complete genomeExonuclease RNase T and DNA polymerase III9e-71266
NC_015566:2039431:204149820414982042166669Serratia sp. AS12 chromosome, complete genomeExonuclease RNase T and DNA polymerase III9e-71266
NC_014837:2354241:236160723616072362275669Pantoea sp. At-9b chromosome, complete genomeDNA polymerase III subunit epsilon2e-60231
NC_016816:1970189:198306319830631983731669Pantoea ananatis LMG 5342, complete genomeexodeoxyribonuclease X3e-58224
NC_021066:2226826:224604422460442246703660Raoultella ornithinolytica B6, complete genomeexodeoxyribonuclease X2e-57222
NC_017167:1648913:178021217802121781027816Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA polymerase III subunit epsilon2e-26119
NC_013205:1548500:155584215558421556564723Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, epsilon subunit1e-25117
NC_013205:526281:554529554529555251723Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, epsilon subunit3e-24112
NC_017167:2298962:235386823538682354572705Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA polymerase III subunit epsilon7e-24110
NC_013205:1123280:115256811525681153290723Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,DNA polymerase III, epsilon subunit3e-23108
NC_014727:2036340:205057920505792051475897Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,DNA polymerase iii polc-type7e-1684.3
NC_002939:1505701:151169815116981512243546Geobacter sulfurreducens PCA, complete genomeexonuclease2e-1376.3
NC_012526:2155947:215999921599992160607609Deinococcus deserti VCD115, complete genomeputative DNA-directed DNA polymerase (DNA polymerase III, epsilon subunit)1e-1273.6
NC_011206:1379068:139867713986771399339663Acidithiobacillus ferrooxidans ATCC 53993, complete genomeExonuclease RNase T and DNA polymerase III1e-1273.6
NC_002620:936869:955612955612956364753Chlamydia muridarum Nigg, complete genomeDNA polymerase III subunit epsilon2e-1272.4
NC_008149:3251196:327387932738793274643765Yersinia pestis Nepal516, complete genomeDNA polymerase III, epsilon chain5e-1271.2
NC_004088:3382148:340481234048123405576765Yersinia pestis KIM, complete genomeDNA polymerase III subunit epsilon5e-1271.2
NC_009381:1783886:182654518265451827309765Yersinia pestis Pestoides F chromosome, complete genomeDNA polymerase III subunit epsilon5e-1271.2
NC_017353:1699652:1711348171134817156644317Staphylococcus lugdunensis N920143, complete genomeDNA polymerase III PolC-type1e-1170.1
NC_011772:3787500:3799826379982638041274302Bacillus cereus G9842, complete genomeDNA polymerase III, alpha subunit, Gram-positive type2e-1169.3
NC_017179:1378875:1381865138186513861634299Clostridium difficile BI1, complete genomeDNA polymerase III PolC-type2e-1169.3
NC_013315:1370000:1372091137209113763894299Clostridium difficile CD196 chromosome, complete genomeDNA polymerase III PolC-type2e-1169.3
NC_016798:586689:605933605933606685753Chlamydia trachomatis A2497, complete genomeDNA polymerase III subunit epsilon3e-1168.9
NC_012687:586657:605901605901606653753Chlamydia trachomatis B/TZ1A828/OT chromosome, complete genomeDNA polymerase III subunit epsilon3e-1168.9
NC_004722:3777907:3790222379022237945294308Bacillus cereus ATCC 14579, complete genomeDNA polymerase III subunit alpha3e-1168.9
NC_014171:3701051:3713367371336737176684302Bacillus thuringiensis BMB171 chromosome, complete genomeDNA polymerase III PolC3e-1168.9
NC_011725:3821789:3834107383410738384084302Bacillus cereus B4264 chromosome, complete genomeDNA polymerase III PolC3e-1168.9
NC_003909:3606177:3606177360617736090892913Bacillus cereus ATCC 10987, complete genomeDNA polymerase III, alpha subunit, Gram-positive type3e-1168.9
NC_012121:897866:9022149022149065274314Staphylococcus carnosus subsp. carnosus TM300, complete genomehomolog of DNA polymerase III, alpha subunit3e-1168.9
NC_017437:586692:605936605936606688753Chlamydia trachomatis A2497 chromosome, complete genomeExonuclease family protein3e-1168.9
NC_014935:836868:855099855099855983885Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeexonuclease rnase t and DNA polymerase iii3e-1168.9
NC_017440:583392:603689603689604441753Chlamydia trachomatis G/11074 chromosome, complete genomeDNA polymerase III subunit epsilon2e-1168.9
NC_017439:583513:603794603794604546753Chlamydia trachomatis E/150 chromosome, complete genomeDNA polymerase III subunit epsilon2e-1168.9
NC_017432:583328:603625603625604377753Chlamydia trachomatis G/9301 chromosome, complete genomeDNA polymerase III subunit epsilon2e-1168.9
NC_017431:583529:603810603810604562753Chlamydia trachomatis E/11023 chromosome, complete genomeDNA polymerase III subunit epsilon2e-1168.9
NC_017430:582000:603180603180603932753Chlamydia trachomatis G/11222 chromosome, complete genomeDNA polymerase III subunit epsilon2e-1168.9
NC_017429:583327:603624603624604376753Chlamydia trachomatis G/9768 chromosome, complete genomeDNA polymerase III subunit epsilon2e-1168.9
NC_012686:586714:605963605963606715753Chlamydia trachomatis B/Jali20/OT chromosome, complete genomeDNA polymerase III subunit epsilon2e-1168.9
NC_011658:3603009:3617434361743436217354302Bacillus cereus AH187 chromosome, complete genomeDNA polymerase III PolC4e-1168.6
NC_016771:3555506:3569931356993135742324302Bacillus cereus NC7401, complete genomeDNA polymerase III subunit alpha4e-1168.6
NC_008600:3643905:3660271366027136631892919Bacillus thuringiensis str. Al Hakam, complete genomeDNA polymerase III, alpha subunit3e-1168.6
NC_012472:3661912:3678278367827836811902913Bacillus cereus 03BB102, complete genomeDNA polymerase III, PolC-type3e-1168.6
NC_017208:3816753:3829460382946038337614302Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA polymerase III PolC3e-1168.6
NC_016779:3579743:3596109359610935990212913Bacillus cereus F837/76 chromosome, complete genomeDNA polymerase III subunit alpha3e-1168.6
NC_010184:3675424:3688149368814936924504302Bacillus weihenstephanensis KBAB4, complete genomeDNA polymerase III, alpha subunit5e-1168.2
NC_009698:2367171:2397736239773624020344299Clostridium botulinum A str. Hall chromosome, complete genomeDNA polymerase III PolC5e-1168.2
NC_009697:2394826:2425391242539124296894299Clostridium botulinum A str. ATCC 19397 chromosome, completeDNA polymerase III PolC5e-1168.2
NC_009495:2524000:2553368255336825576664299Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA polymerase III PolC5e-1168.2
NC_017436:581986:603362603362604114753Chlamydia trachomatis D-LC chromosome, complete genomeExonuclease family protein5e-1168.2
NC_017434:581988:603364603364604116753Chlamydia trachomatis D-EC chromosome, complete genomeExonuclease family protein5e-1168.2
NC_000117:581987:603363603363604115753Chlamydia trachomatis D/UW-3/CX, complete genomeDNA polymerase III subunit epsilon5e-1168.2
NC_014335:3567931:3580242358024235845434302Bacillus cereus biovar anthracis str. CI chromosome, completeDNA polymerase III subunit alpha4e-1168.2
NC_005945:3615623:3630085363008536343864302Bacillus anthracis str. Sterne, complete genomeDNA polymerase III subunit alpha4e-1168.2
NC_012659:3617000:3629417362941736337184302Bacillus anthracis str. A0248, complete genomeDNA polymerase III PolC4e-1168.2
NC_012581:559182:6048696048696091704302Bacillus anthracis str. CDC 684 chromosome, complete genomeDNA polymerase III PolC4e-1168.2
NC_011773:3651963:3664276366427636685774302Bacillus cereus AH820 chromosome, complete genomeDNA polymerase III PolC4e-1168.2
NC_003997:3617000:3629390362939036336914302Bacillus anthracis str. Ames, complete genomeDNA polymerase III subunit alpha4e-1168.2
NC_005957:3638750:3651061365106136553624302Bacillus thuringiensis serovar konkukian str. 97-27, completeDNA polymerase III subunit alpha4e-1168.2
NC_006274:3697255:3709943370994337142444302Bacillus cereus E33L, complete genomeDNA polymerase III subunit alpha4e-1168.2
NC_007530:3616828:3629517362951736338184302Bacillus anthracis str. 'Ames Ancestor', complete genomeDNA polymerase III subunit alpha4e-1168.2
NC_004461:921364:9423929423929467204329Staphylococcus epidermidis ATCC 12228, complete genomeDNA polymerase III, alpha chain PolC-type6e-1167.8
NC_011969:3549000:3561396356139635656974302Bacillus cereus Q1 chromosome, complete genomeDNA polymerase iii polc6e-1167.8
NC_012563:2721658:2727878272787827321764299Clostridium botulinum A2 str. Kyoto, complete genomeDNA polymerase III, alpha subunit, Gram-positive type8e-1167.4
NC_012658:2584355:2611499261149926157974299Clostridium botulinum Ba4 str. 657 chromosome, complete genomeDNA polymerase III PolC7e-1167.4
NC_017338:1234077:1236038123603812403544317Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeDNA polymerase III subunit alpha7e-1167.4
NC_017341:1291583:1295844129584413001604317Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,DNA polymerase III subunit alpha7e-1167.4
NC_002952:1291444:1295705129570513000214317Staphylococcus aureus subsp. aureus MRSA252, complete genomeDNA polymerase III PolC-type7e-1167.4
NC_007622:1214629:1218890121889012232064317Staphylococcus aureus RF122, complete genomeDNA polymerase III7e-1167.4
NC_009782:1327340:1331601133160113359174317Staphylococcus aureus subsp. aureus Mu3, complete genomeDNA polymerase III alpha chain PolC-type7e-1167.4
NC_010516:2511035:2541591254159125458894299Clostridium botulinum B1 str. Okra, complete genomeDNA polymerase III, alpha subunit, Gram-positive type9e-1167
NC_007350:1551457:1558499155849915628154317Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,DNA polymerase III alpha chain PolC-type1e-1066.6
NC_014152:1430156:1433347143334714376754329Thermincola sp. JR, complete genomeDNA polymerase III, alpha subunit1e-1066.6
NC_010287:899945:921959921959922711753Chlamydia trachomatis 434/Bu, complete genomeDNA polymerase III, epsilon chain1e-1066.6
NC_015744:900000:921428921428922180753Chlamydia trachomatis L2c chromosome, complete genomeexonuclease, DNA polymerase III, epsilon subunit family domain protein1e-1066.6
NC_010280:899974:921987921987922739753Chlamydia trachomatis L2b/UCH-1/proctitis, complete genomeDNA polymerase III, epsilon chain1e-1066.6
NC_012438:1514376:152834415283441528961618Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeDNA polymerase III PolC-type (PolIII)2e-1066.2
NC_010520:2585014:2616121261612126204194299Clostridium botulinum A3 str. Loch Maree, complete genomeDNA polymerase III, alpha subunit, Gram-positive type2e-1066.2
NC_009674:2551759:2564124256412425684254302Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeDNA polymerase III PolC2e-1065.9
NC_014103:3985897:4000185400018540044954311Bacillus megaterium DSM319 chromosome, complete genomeDNA polymerase III subunit alpha3e-1065.5
NC_011149:309556:313026313026313766741Salmonella enterica subsp. enterica serovar Agona str. SL483,DNA polymerase III, epsilon subunit4e-1065.1
NC_014762:1715190:172509317250931725974882Sulfuricurvum kujiense DSM 16994 chromosome, complete genomeexonuclease RNAase t and DNA polymerase iii4e-1065.1
NC_008609:2518993:253566125356612536173513Pelobacter propionicus DSM 2379, complete genomeDNA-directed DNA polymerase9e-1063.9
NC_014836:993448:100898610089861009495510Desulfurispirillum indicum S5 chromosome, complete genomeDNA-directed DNA polymerase1e-0963.2
NC_014311:1545175:154795115479511548679729Ralstonia solanacearum PSI07 chromosome, complete genomeDNA polymerase III epsilon subunit2e-0963.2
NC_016628:935420:938432938432938986555Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceDNA polymerase III subunit alpha2e-0962.8
NC_015975:1056731:1056731105673110610804350Lactobacillus ruminis ATCC 27782 chromosome, complete genomeDNA polymerase III PolC2e-0962.8
NC_013037:6209424:621973662197366220260525Dyadobacter fermentans DSM 18053, complete genomeDNA polymerase III, epsilon subunit3e-0962.4
NC_007517:3430237:345016934501693450825657Geobacter metallireducens GS-15, complete genomeDNA polymerase III, epsilon subunit3e-0962.4
NC_007645:6858465:687346568734656874034570Hahella chejuensis KCTC 2396, complete genomeputative exonuclease4e-0961.6
NC_013169:1661135:1661135166113516628891755Kytococcus sedentarius DSM 20547, complete genomeexonuclease, DNA polymerase III, epsilon subunit family8e-0960.8
NC_009253:2139379:2156194215619421604744281Desulfotomaculum reducens MI-1 chromosome, complete genomeDNA polymerase III subunit alpha7e-0960.8
NC_005945:3359598:337683333768333377780948Bacillus anthracis str. Sterne, complete genomeDNA polymerase III subunit epsilon7e-0960.8
NC_014722:771483:789311789311790054744Burkholderia rhizoxinica HKI 454, complete genomeDNA polymerase III, epsilon chain9e-0960.5
NC_006831:821000:824448824448825176729Ehrlichia ruminantium str. Gardel, complete genomeDNA polymerase III, epsilon chain1e-0860.5
NC_005295:845000:848673848673849401729Ehrlichia ruminantium str. Welgevonden, complete genomeDNA polymerase III, epsilon subunit1e-0860.1
NC_007802:179780:185734185734186429696Jannaschia sp. CCS1, complete genomeDNA polymerase III, epsilon subunit2e-0859.7
NC_013595:9994000:100023441000234410002913570Streptosporangium roseum DSM 43021, complete genomeDNA-directed DNA polymerase2e-0859.7
NC_004347:2668000:268937626893762690104729Shewanella oneidensis MR-1, complete genomeDNA polymerase III, epsilon subunit1e-0859.7
NC_015381:1318818:133573613357361336347612Burkholderia gladioli BSR3 chromosome 1, complete sequenceDNA polymerase III subunit epsilon2e-0859.3
NC_006832:825000:828548828548829276729Ehrlichia ruminantium str. Welgevonden, complete genomeDNA polymerase III, epsilon chain2e-0859.3
NC_016822:246715:248755248755249486732Shigella sonnei 53G, complete genomeDNA polymerase III subunit epsilon4e-0858.5
NC_008340:2272692:2275718227571822779072190Alkalilimnicola ehrlichei MLHE-1, complete genomeputative PAS/PAC sensor protein4e-0858.5
CP002516:3863932:387441338744133875153741Escherichia coli KO11, complete genomeDNA polymerase III, epsilon subunit4e-0858.5
CP002185:234719:236750236750237490741Escherichia coli W, complete genomeDNA polymerase III, epsilon subunit4e-0858.5
NC_016902:3863932:387441338744133875153741Escherichia coli KO11FL chromosome, complete genomeDNA polymerase III subunit epsilon4e-0858.5
NC_017294:758992:7723037723037764964194Candidatus Arthromitus sp. SFB-mouse-Yit, complete genomeDNA polymerase III PolC4e-0858.5
NC_020260:312805:321527321527322111585Cronobacter sakazakii Sp291, complete genomeputative exonuclease CP814e-0858.2
NC_007530:1459412:1473989147398914767932805Bacillus anthracis str. 'Ames Ancestor', complete genomeATP-dependent DNA helicase9e-0857.4
NC_005945:1459357:1473943147394314767472805Bacillus anthracis str. Sterne, complete genomeATP-dependent DNA helicase9e-0857.4
NC_008322:2637646:265401326540132654741729Shewanella sp. MR-7, complete genomeDNA polymerase III, epsilon subunit8e-0857.4
NC_008321:2569315:258567025856702586398729Shewanella sp. MR-4, complete genomeDNA polymerase III, epsilon subunit8e-0857.4
NC_008577:2818546:284401128440112844739729Shewanella sp. ANA-3 chromosome 1, complete sequenceDNA polymerase III, epsilon subunit8e-0857.4
NC_008313:2685531:268771026877102688450741Ralstonia eutropha H16 chromosome 1, complete sequenceDNA polymerase III epsilon subunit1e-0757
NC_017033:1525132:153944315394431539967525Frateuria aurantia DSM 6220 chromosome, complete genomeDNA polymerase III subunit epsilon family exonuclease1e-0756.6
NC_003198:4453457:450308645030864503670585Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative exonuclease1e-0756.6
NC_009952:3596399:363066736306673631359693Dinoroseobacter shibae DFL 12, complete genomeDNA polymerase III subunit epsilon1e-0756.6
NC_006511:2677964:269130926913092691893585Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative exonuclease1e-0756.6
NC_011147:2676972:268684526868452687429585Salmonella enterica subsp. enterica serovar Paratyphi A strexonuclease1e-0756.6
NC_008786:4040864:404372840437284044402675Verminephrobacter eiseniae EF01-2, complete genomeputative DNA exonuclease X2e-0756.2
NC_010531:708049:722835722835723545711Polynucleobacter necessarius STIR1, complete genomeDNA polymerase III, epsilon subunit3e-0755.5
NC_019970:1343670:1355741135574113599734233Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeDNA polymerase III, alpha chain3e-0755.5
NC_017506:2089769:210113921011392101711573Marinobacter adhaerens HP15 chromosome, complete genomeexonuclease RNase T and DNA polymerase III3e-0755.5
NC_015275:911999:916822916822917739918Clostridium lentocellum DSM 5427 chromosome, complete genomeExonuclease RNase T and DNA polymerase III7e-0754.3
NC_009901:2915939:293148329314832932211729Shewanella pealeana ATCC 700345, complete genomeDNA polymerase III, epsilon subunit9e-0753.9
NC_011667:1:469146915296606Thauera sp. MZ1T plasmid pTha01, complete sequenceExonuclease RNase T and DNA polymerase III1e-0653.9
NC_015554:4724245:4724245472424547263772133Alteromonas sp. SN2 chromosome, complete genomeDNA polymerase III, epsilon subunit1e-0653.5
NC_016845:4046142:405387740538774054458582Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative exonuclease CP812e-0653.1
NC_014363:2035141:4254425472593006Olsenella uli DSM 7084 chromosome, complete genomeDNA polymerase III, epsilon subunit2e-0652.8
NC_015677:1:204132041321027615Ramlibacter tataouinensis TTB310 chromosome, complete genomeexonuclease protein4e-0651.6
NC_013508:3188978:322647132264713227070600Edwardsiella tarda EIB202, complete genomeOrf81 bacteriophage 1861e-0550.4