Pre_GI: BLASTN Hits

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Query: NC_011094:4361238 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 4361238, End: 4406227, Length: 44990

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006905:44053014405301444609940799Salmonella enterica subsp. enterica serovar Choleraesuis str063300BLASTN svgBLASTP svg
NC_011083:44666344466634449511028477Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,041400BLASTN svgBLASTP svg
NC_011080:44618514461851449032128471Salmonella enterica subsp. enterica serovar Newport str. SL254,040390BLASTN svgBLASTP svg
NC_003197:44706834470683449915328471Salmonella typhimurium LT2, complete genome039670BLASTN svgBLASTP svg
NC_003198:43158074315807434427728471Salmonella enterica subsp. enterica serovar Typhi str. CT18,039490BLASTN svgBLASTP svg
NC_004631:43004574300457432892728471Salmonella enterica subsp. enterica serovar Typhi Ty2, complete039490BLASTN svgBLASTP svg
NC_010102:43965004396500442510928610Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,039380BLASTN svgBLASTP svg
NC_011149:43903154390315441878928475Salmonella enterica subsp. enterica serovar Agona str. SL483,039190BLASTN svgBLASTP svg
NC_006511:42254554225455425318227728Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC021730BLASTN svgBLASTP svg
NC_010067:33103363310336336496054625Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete09757BLASTN svgBLASTP svg
NC_021066:37694053769405379116821764Raoultella ornithinolytica B6, complete genome03075BLASTN svgBLASTP svg
NC_020181:3585898*3585898362589840001Enterobacter aerogenes EA1509E, complete genome02494BLASTN svgBLASTP svg
NC_007613:41197714119771413859918829Shigella boydii Sb227, complete genome02474BLASTN svgBLASTP svg
NC_010658:42573104257310427618618877Shigella boydii CDC 3083-94, complete genome02450BLASTN svgBLASTP svg
NC_012912:777592*77759280009922508Dickeya zeae Ech1591, complete genome01386BLASTN svgBLASTP svg
NC_013421:40060854006085403278526701Pectobacterium wasabiae WPP163, complete genome01292BLASTN svgBLASTP svg
NC_014837:38786838786841433626469Pantoea sp. At-9b chromosome, complete genome0741BLASTN svgBLASTP svg
NC_008463:1912348*1912348195418241835Pseudomonas aeruginosa UCBPP-PA14, complete genome5e-105391BLASTN svgBLASTP svg
NC_007005:5367454*5367454539426326810Pseudomonas syringae pv. syringae B728a, complete genome1e-90343BLASTN svgBLASTP svg
NC_008149:3790897*3790897381416023264Yersinia pestis Nepal516, complete genome9e-88333BLASTN svgBLASTP svg
NC_010159:74181974181976361621798Yersinia pestis Angola, complete genome9e-88333BLASTN svgBLASTP svg
NC_010465:4222586*4222586424312420539Yersinia pseudotuberculosis YPIII, complete genome9e-88333BLASTN svgBLASTP svg
NC_015556:717993*71799374011322121Pseudomonas fulva 12-X chromosome, complete genome9e-88333BLASTN svgBLASTP svg
NC_021150:603447*60344762358120135Azotobacter vinelandii CA6, complete genome5e-71278BLASTN svgBLASTP svg
NC_012560:603447*60344762358120135Azotobacter vinelandii DJ, complete genome5e-71278BLASTN svgBLASTP svg
NC_005773:5149768*5149768521141661649Pseudomonas syringae pv. phaseolicola 1448A, complete genome5e-71278BLASTN svgBLASTP svg
NC_002516:4747154*4747154479172444571Pseudomonas aeruginosa PAO1, complete genome1e-65260BLASTN svgBLASTP svg
NC_014541:39275003927500394969522196Ferrimonas balearica DSM 9799 chromosome, complete genome2e-45192BLASTN svgBLASTP svg
NC_005810:515744*51574453809922356Yersinia pestis biovar Microtus str. 91001, complete genome3e-41178BLASTN svgBLASTP svg
NC_006155:456000*45600047849522496Yersinia pseudotuberculosis IP 32953, complete genome1e-40176BLASTN svgBLASTP svg
NC_012691:24140424140426512723724Tolumonas auensis DSM 9187, complete genome5e-40174BLASTN svgBLASTP svg
NC_013592:713036*71303676182148786Dickeya dadantii Ech586, complete genome2e-33153BLASTN svgBLASTP svg
NC_008570:2216736*2216736227194055205Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome5e-31145BLASTN svgBLASTP svg
NC_010682:28841528841531019821784Ralstonia pickettii 12J chromosome 1, complete sequence3e-29139BLASTN svgBLASTP svg
NC_004547:843475*84347586442120947Erwinia carotovora subsp. atroseptica SCRI1043, complete genome7e-27131BLASTN svgBLASTP svg
NC_015581:128350*12835015453826189Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome7e-24121BLASTN svgBLASTP svg
NC_007434:78850078850080659718098Burkholderia pseudomallei 1710b chromosome I, complete sequence6e-21111BLASTN svgBLASTP svg
NC_006350:59589359589364981453922Burkholderia pseudomallei K96243 chromosome 1, complete sequence6e-21111BLASTN svgBLASTP svg
NC_008767:92781092781095056622757Neisseria meningitidis FAM18, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_012560:3505235*3505235352968824454Azotobacter vinelandii DJ, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_021150:3505234*3505234352968724454Azotobacter vinelandii CA6, complete genome1e-1697.6BLASTN svgBLASTP svg
NC_008463:31688373168837319814929313Pseudomonas aeruginosa UCBPP-PA14, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_008390:24483792448379247019921821Burkholderia cepacia AMMD chromosome 1, complete sequence2e-1489.7BLASTN svgBLASTP svg
NC_012660:52423925242392526802925638Pseudomonas fluorescens SBW25 chromosome, complete genome9e-1487.7BLASTN svgBLASTP svg
NC_004547:59084459084461116720324Erwinia carotovora subsp. atroseptica SCRI1043, complete genome4e-1385.7BLASTN svgBLASTP svg
NC_014366:478000*47800050156823569Gamma proteobacterium HdN1, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_009053:89596589596592080824844Actinobacillus pleuropneumoniae L20, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_015559:36451813645181366972124541Marinomonas posidonica IVIA-Po-181 chromosome, complete genome6e-1281.8BLASTN svgBLASTP svg
NC_006677:435652*43565246548229831Gluconobacter oxydans 621H, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_015458:2998000*2998000302249324494Pusillimonas sp. T7-7 chromosome, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_014216:2538500*2538500256387025371Desulfurivibrio alkaliphilus AHT2 chromosome, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_007794:2839239*2839239287591536677Novosphingobium aromaticivorans DSM 12444, complete genome9e-1177.8BLASTN svgBLASTP svg
NC_012792:96229296229299068328392Variovorax paradoxus S110 chromosome 2, complete genome4e-1075.8BLASTN svgBLASTP svg
NC_007414:56508565089199935492Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequence4e-1075.8BLASTN svgBLASTP svg
NC_002128:35000350006549030491Escherichia coli O157:H7 str. Sakai plasmid pO157, complete4e-1075.8BLASTN svgBLASTP svg
NC_003295:21117302111730213127819549Ralstonia solanacearum GMI1000, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_007435:2352954*2352954238639233439Burkholderia pseudomallei 1710b chromosome II, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_007614:25172262517226254029423069Nitrosospira multiformis ATCC 25196 chromosome 1, complete1e-0973.8BLASTN svgBLASTP svg
NC_009075:587441*58744162177434334Burkholderia pseudomallei 668 chromosome II, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_009078:510525*51052554399133467Burkholderia pseudomallei 1106a chromosome II, complete sequence1e-0973.8BLASTN svgBLASTP svg
NC_013093:65111086511108653012519018Actinosynnema mirum DSM 43827, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_014734:2285762*2285762230877023009Paludibacter propionicigenes WB4 chromosome, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_007650:2429307*2429307246662437318Burkholderia thailandensis E264 chromosome II, complete sequence5e-0971.9BLASTN svgBLASTP svg
NC_001263:2461941*2461941248301921079Deinococcus radiodurans R1 chromosome 1, complete sequence5e-0971.9BLASTN svgBLASTP svg
NC_014532:29891852989185301261923435Halomonas elongata DSM 2581, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_011753:3088952*3088952311106322112Vibrio splendidus LGP32 chromosome 1, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_011999:53093053093055100020071Macrococcus caseolyticus JCSC5402, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_015320:273979*27397929615522177Archaeoglobus veneficus SNP6 chromosome, complete genome9e-0867.9BLASTN svgBLASTP svg
NC_015387:1803938*1803938184009936162Marinithermus hydrothermalis DSM 14884 chromosome, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_004757:2657490*2657490268195024461Nitrosomonas europaea ATCC 19718, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_020908:50474105047410506517417765Octadecabacter arcticus 238, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_010645:73573735739609922527Bordetella avium 197N, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_006087:345976*34597640567959704Leifsonia xyli subsp. xyli str. CTCB07, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_019897:20952320952323439624874Thermobacillus composti KWC4 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_013716:1178383*1178383120516726785Citrobacter rodentium ICC168, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_009663:982048982048100544623399Sulfurovum sp. NBC37-1, complete genome5e-0661.9BLASTN svgBLASTP svg