Pre_GI: BLASTN Hits

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Query: NC_011094:1435347 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 1435347, End: 1472859, Length: 37513

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006905:15090931509093153636427272Salmonella enterica subsp. enterica serovar Choleraesuis str049980BLASTN svgBLASTP svg
NC_011080:14707941470794150838537592Salmonella enterica subsp. enterica serovar Newport str. SL254,046940BLASTN svgBLASTP svg
NC_003197:1471349*1471349150894537597Salmonella typhimurium LT2, complete genome046860BLASTN svgBLASTP svg
NC_004631:13258171325817135139825582Salmonella enterica subsp. enterica serovar Typhi Ty2, complete046210BLASTN svgBLASTP svg
NC_003198:1621347*1621347164626724921Salmonella enterica subsp. enterica serovar Typhi str. CT18,044710BLASTN svgBLASTP svg
NC_010102:16165301616530165555739028Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,040290BLASTN svgBLASTP svg
NC_011149:17106011710601173914728547Salmonella enterica subsp. enterica serovar Agona str. SL483,039860BLASTN svgBLASTP svg
NC_006511:1506915*1506915154594239028Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC039740BLASTN svgBLASTP svg
NC_011083:14768941476894150250725614Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,024760BLASTN svgBLASTP svg
NC_010067:1507823*1507823153618428362Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete012790BLASTN svgBLASTP svg
NC_013282:20260832026083208019854116Cronobacter turicensis, complete genome1e-129472BLASTN svgBLASTP svg
NC_020063:20772332077233210134824116Enterobacteriaceae bacterium strain FGI 57, complete genome4e-111410BLASTN svgBLASTP svg
NC_006511:42254554225455425318227728Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC9e-66260BLASTN svgBLASTP svg
NC_006511:1579776*1579776160172721952Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-64256BLASTN svgBLASTP svg
NC_009778:19562251956225198255126327Enterobacter sakazakii ATCC BAA-894, complete genome1e-64256BLASTN svgBLASTP svg
NC_011083:33891033891036299924090Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-64256BLASTN svgBLASTP svg
NC_011149:46774124677412471244835037Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-64256BLASTN svgBLASTP svg
NC_020260:19933441993344201786024517Cronobacter sakazakii Sp291, complete genome1e-64256BLASTN svgBLASTP svg
NC_011149:30955630955633763728082Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-63252BLASTN svgBLASTP svg
NC_011080:33312133312135949426374Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-63252BLASTN svgBLASTP svg
NC_011080:47032664703266472876525500Salmonella enterica subsp. enterica serovar Newport str. SL254,4e-62248BLASTN svgBLASTP svg
NC_010102:27623042762304278909926796Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,4e-62248BLASTN svgBLASTP svg
NC_004631:26159082615908263824422337Salmonella enterica subsp. enterica serovar Typhi Ty2, complete6e-61244BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,9e-60240BLASTN svgBLASTP svg
NC_010102:17031721703172172512221951Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-59238BLASTN svgBLASTP svg
NC_006905:4638707*4638707467273934033Salmonella enterica subsp. enterica serovar Choleraesuis str2e-57232BLASTN svgBLASTP svg
NC_012912:84433984433986800523667Dickeya zeae Ech1591, complete genome4e-37165BLASTN svgBLASTP svg
NC_003197:1170746*1170746119097320228Salmonella typhimurium LT2, complete genome2e-30143BLASTN svgBLASTP svg
NC_011080:11669511166951119330926359Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-30143BLASTN svgBLASTP svg
NC_011083:1173802*1173802119655222751Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-30143BLASTN svgBLASTP svg
NC_006511:25405002540500256809927600Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-30141BLASTN svgBLASTP svg
NC_003198:3881221*3881221390454423324Salmonella enterica subsp. enterica serovar Typhi str. CT18,6e-30141BLASTN svgBLASTP svg
NC_003197:33208633208635504122956Salmonella typhimurium LT2, complete genome6e-30141BLASTN svgBLASTP svg
NC_012912:24270924270927148728779Dickeya zeae Ech1591, complete genome9e-29137BLASTN svgBLASTP svg
NC_011149:1035990*1035990106096324974Salmonella enterica subsp. enterica serovar Agona str. SL483,9e-26127BLASTN svgBLASTP svg
NC_021150:2026496*2026496204664620151Azotobacter vinelandii CA6, complete genome4e-25125BLASTN svgBLASTP svg
NC_015410:3209954*3209954323120121248Pseudomonas mendocina NK-01 chromosome, complete genome4e-25125BLASTN svgBLASTP svg
NC_012560:2026483*2026483204663320151Azotobacter vinelandii DJ, complete genome4e-25125BLASTN svgBLASTP svg
NC_003198:1078113*1078113110191423802Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-23119BLASTN svgBLASTP svg
NC_004631:1881214*1881214190534324130Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-23119BLASTN svgBLASTP svg
NC_006511:1808815*1808815183245923645Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-23119BLASTN svgBLASTP svg
NC_012691:17430381743038178035537318Tolumonas auensis DSM 9187, complete genome2e-23119BLASTN svgBLASTP svg
NC_012779:95755895755898306025503Edwardsiella ictaluri 93-146, complete genome2e-23119BLASTN svgBLASTP svg
NC_015379:4691868*4691868471845126584Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,9e-23117BLASTN svgBLASTP svg
NC_010102:2020762*2020762204160320842Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,9e-23117BLASTN svgBLASTP svg
NC_009434:2577717*2577717259643418718Pseudomonas stutzeri A1501, complete genome9e-23117BLASTN svgBLASTP svg
NC_008702:1153344*1153344117844425101Azoarcus sp. BH72, complete genome9e-23117BLASTN svgBLASTP svg
NC_012779:33168773316877333727020394Edwardsiella ictaluri 93-146, complete genome5e-21111BLASTN svgBLASTP svg
NC_013508:31889783188978324937660399Edwardsiella tarda EIB202, complete genome5e-21111BLASTN svgBLASTP svg
NC_003112:744476*74447676938624911Neisseria meningitidis MC58, complete genome2e-20109BLASTN svgBLASTP svg
NC_007484:1229899*1229899125251522617Nitrosococcus oceani ATCC 19707, complete genome2e-20109BLASTN svgBLASTP svg
NC_007614:26158826158828609924512Nitrosospira multiformis ATCC 25196 chromosome 1, complete2e-20109BLASTN svgBLASTP svg
NC_008781:26550712655071268316628096Polaromonas naphthalenivorans CJ2, complete genome2e-20109BLASTN svgBLASTP svg
NC_013446:2237854*2237854227259934746Comamonas testosteroni CNB-2, complete genome2e-20109BLASTN svgBLASTP svg
NC_013446:32090003209000323064521646Comamonas testosteroni CNB-2, complete genome2e-20109BLASTN svgBLASTP svg
NC_013889:1202385*1202385122409321709Thioalkalivibrio sp. K90mix chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_014118:2316000*2316000234104325044Burkholderia sp. CCGE1002 chromosome chromosome 2, complete2e-20109BLASTN svgBLASTP svg
NC_015224:44261674426167445165025484Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-20109BLASTN svgBLASTP svg
NC_015563:43830004383000440526222263Delftia sp. Cs1-4 chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_016002:1326500*1326500135490028401Pseudogulbenkiania sp. NH8B, complete genome2e-20109BLASTN svgBLASTP svg
NC_018691:3525430*3525430358162756198Alcanivorax dieselolei B5 chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_005126:274000*27400029651122512Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-20107BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_007146:14054591405459143009924641Haemophilus influenzae 86-028NP, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010939:896500*89650092159925100Actinobacillus pleuropneumoniae serovar 7 str. AP76, complete2e-1799.6BLASTN svgBLASTP svg
NC_012779:26198712619871264372223852Edwardsiella ictaluri 93-146, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_015581:771482*77148280463933158Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome2e-1799.6BLASTN svgBLASTP svg
NC_010658:1772994*1772994179509922106Shigella boydii CDC 3083-94, complete genome8e-1797.6BLASTN svgBLASTP svg
NC_007613:1353500*1353500137891925420Shigella boydii Sb227, complete genome8e-1797.6BLASTN svgBLASTP svg
NC_012779:25861752586175261323427060Edwardsiella ictaluri 93-146, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_015856:17335001733500176113127632Collimonas fungivorans Ter331 chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_015968:74124*7412410053226409Enterobacter asburiae LF7a chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_008577:24021652402165244759945435Shewanella sp. ANA-3 chromosome 1, complete sequence5e-1591.7BLASTN svgBLASTP svg
NC_012880:15852551585255161262427370Dickeya dadantii Ech703, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_015497:2997275*2997275302162024346Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome5e-1281.8BLASTN svgBLASTP svg
NC_013592:14245601424560145021625657Dickeya dadantii Ech586, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_007298:2856104*2856104289461138508Dechloromonas aromatica RCB, complete genome7e-1177.8BLASTN svgBLASTP svg
NC_010676:2869936*2869936289564625711Burkholderia phytofirmans PsJN chromosome 2, complete sequence7e-1177.8BLASTN svgBLASTP svg
NC_010676:897801*89780191973821938Burkholderia phytofirmans PsJN chromosome 2, complete sequence7e-1177.8BLASTN svgBLASTP svg
NC_003143:1059580*1059580109467535096Yersinia pestis CO92, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_004088:3689000*3689000372277733778Yersinia pestis KIM, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_005810:39172543917254395265235399Yersinia pestis biovar Microtus str. 91001, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_006155:3805640*3805640384073735098Yersinia pseudotuberculosis IP 32953, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_008149:3556999*3556999359064933651Yersinia pestis Nepal516, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_008150:31790331790335159933697Yersinia pestis Antiqua, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_010634:3720214*3720214375380933596Yersinia pseudotuberculosis PB1/+, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_006856:958309583012194026111Salmonella enterica subsp. enterica serovar Choleraesuis str3e-1075.8BLASTN svgBLASTP svg
NC_015379:46303674630367466559935233Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,3e-1075.8BLASTN svgBLASTP svg
NC_012912:40718594071859411755145693Dickeya zeae Ech1591, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_012779:1449500*1449500150683157332Edwardsiella ictaluri 93-146, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_012779:12865001286500132459938100Edwardsiella ictaluri 93-146, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome1e-0973.8BLASTN svgBLASTP svg
NC_011751:1405381*1405381142709921719Escherichia coli UMN026 chromosome, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_011740:27699612769961278959919639Escherichia fergusonii ATCC 35469, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_009800:16575501657550168574228193Escherichia coli HS, complete genome5e-0971.9BLASTN svgBLASTP svg
NC_007952:1293024*1293024131920626183Burkholderia xenovorans LB400 chromosome 2, complete sequence2e-0869.9BLASTN svgBLASTP svg
NC_009663:2500186*2500186252039120206Sulfurovum sp. NBC37-1, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_011149:3863913*3863913388509921187Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-0869.9BLASTN svgBLASTP svg
NC_012779:3176820*3176820323178054961Edwardsiella ictaluri 93-146, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_007947:2140000*2140000218514745148Methylobacillus flagellatus KT, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_007645:33438153343815337007526261Hahella chejuensis KCTC 2396, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_014935:31020*310205039419375Nitratifractor saLSUginis DSM 16511 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014722:1084616*1084616111430129686Burkholderia rhizoxinica HKI 454, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_012559:2752825*2752825277274819924Laribacter hongkongensis HLHK9, complete genome4e-0661.9BLASTN svgBLASTP svg