Pre_GI: BLASTP Hits

Some Help

Query: NC_011094:593100:615786 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 615786, End: 615962, Length: 177

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013850:1887556:190854819085481908943396Klebsiella variicola At-22 chromosome, complete genomeCrossover junction endodeoxyribonuclease1e-27121
NC_006905:368942:389632389632390027396Salmonella enterica subsp. enterica serovar Choleraesuis strRus2e-27120
NC_012125:1330066:135090713509071351302396Salmonella enterica subsp. enterica serovar Paratyphi C strainendodeoxyribonuclease RUS2e-26117
NC_013282:1200993:122183812218381222233396Cronobacter turicensis, complete genomeCrossover junction endodeoxyribonuclease rusA9e-23105
NC_015663:4522109:453090345309034531268366Enterobacter aerogenes KCTC 2190 chromosome, complete genomeendodeoxyribonuclease RUS5e-0856.6
NC_020063:2565605:257464325746432575005363Enterobacteriaceae bacterium strain FGI 57, complete genomeholliday junction resolvase5e-0856.6
NC_015663:4767443:477570747757074776072366Enterobacter aerogenes KCTC 2190 chromosome, complete genomeendodeoxyribonuclease RUS7e-0855.8
NC_016514:2387312:239450623945062394868363Enterobacter cloacae EcWSU1 chromosome, complete genomeCrossover junction endodeoxyribonuclease rusA7e-0855.8
NC_012947:3231893:324005632400563240418363Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeendodeoxyribonuclease RUS1e-0755.5
NC_012967:531000:545261545261545623363Escherichia coli B str. REL606 chromosome, complete genomeendodeoxyribonuclease RUS1e-0755.5
NC_011740:2769961:278010927801092780471363Escherichia fergusonii ATCC 35469, complete genomeendonuclease RUS; DLP12 prophage2e-0754.3
AC_000091:558920:572594572594572956363Escherichia coli W3110 DNA, complete genomeendonuclease RUS2e-0754.3
NC_000913:558920:572594572594572956363Escherichia coli K12, complete genomeDLP12 prophage; endonuclease RUS2e-0754.3
NC_007946:1239278:125538512553851255747363Escherichia coli UTI89, complete genomeCrossover junction endodeoxyribonuclease RusA2e-0754.3
NC_008563:1175035:119277211927721193134363Escherichia coli APEC O1, complete genomeendonuclease RUS2e-0754.3
NC_004431:1401681:141885014188501419212363Escherichia coli CFT073, complete genomeCrossover junction endodeoxyribonuclease rusA2e-0754.3
NC_010473:498252:511926511926512288363Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; endonuclease RUS2e-0754.3
NC_011353:2957962:296545229654522965814363Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeendodeoxyribonuclease RUS2e-0754.3
NC_011742:1177946:119629411962941196656363Escherichia coli S88 chromosome, complete genomeendodeoxyribonuclease RUS2e-0754.3
NC_012759:461680:475354475354475716363Escherichia coli BW2952 chromosome, complete genomeendodeoxyribonuclease RUS2e-0754.3
NC_013008:2910567:292032329203232920685363Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeendodeoxyribonuclease RUS2e-0754.3
NC_013941:699286:712717712717713079363Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCrossover junction endodeoxyribonuclease rusA2e-0754.3
NC_011751:1405381:142429214242921424654363Escherichia coli UMN026 chromosome, complete genomeendodeoxyribonuclease RUS2e-0754.3
NC_011751:643976:660259660259660621363Escherichia coli UMN026 chromosome, complete genomeendodeoxyribonuclease RUS2e-0754.3
CU928145:824367:835595835595835822228Escherichia coli 55989 chromosome, complete genomefragment of endonuclease RUS; DLP12 prophage (partial)5e-0753.1
NC_011748:824367:835595835595835822228Escherichia coli 55989, complete genome5e-0753.1