Pre_GI: BLASTP Hits

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Query: NC_011094:593100:610406 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 610406, End: 610621, Length: 216

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:1330066:134546413454641345679216Salmonella enterica subsp. enterica serovar Paratyphi C strainregulatory protein cro (Antirepressor)5e-34142
NC_006905:368942:383603383603383818216Salmonella enterica subsp. enterica serovar Choleraesuis strregulatory protein cro (Antirepressor)5e-34142
NC_021066:2226826:224391422439142244135222Raoultella ornithinolytica B6, complete genomeregulatory protein cro (Antirepressor)3e-21100
NC_013941:3182576:319016231901623190836675Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-1477.8
NC_021066:2226826:224423422442342244866633Raoultella ornithinolytica B6, complete genomehypothetical protein6e-1476.3
NC_008258:269806:287337287337287969633Shigella flexneri 5 str. 8401, complete genomeputative prophage repressor CI7e-1475.9
NC_007146:1405459:142911714291171430085969Haemophilus influenzae 86-028NP, complete genomehypothetical protein2e-1167.8
NC_014922:825396:848309848309849277969Haemophilus influenzae F3047 chromosome, complete genomehypothetical protein2e-1167.4
NC_009567:904922:904922904922905692771Haemophilus influenzae PittGG chromosome, complete genomehypothetical protein3e-0960.5
NC_009778:959982:977343977343978032690Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-0959.3
NC_010554:2646806:265134526513452651992648Proteus mirabilis HI4320, complete genomephage repressor6e-0856.2
NC_015968:3301958:331235333123533313006654Enterobacter asburiae LF7a chromosome, complete genomephage repressor like XRE family transcriptional regulator2e-0754.7
NC_016809:389561:394152394152394811660Haemophilus influenzae 10810, complete genomehypothetical protein2e-0754.3
NC_009665:3869904:389559738955973896322726Shewanella baltica OS185 chromosome, complete genomeputative phage repressor3e-0753.9
NC_020260:1615135:162344316234431623850408Cronobacter sakazakii Sp291, complete genometranscriptional repressor DicA3e-0753.5
NC_017047:1906000:190737719073771908024648Rahnella aquatilis HX2 chromosome, complete genomeputative repressor protein of prophage6e-0752.8
NC_010682:2422500:243745924374592438367909Ralstonia pickettii 12J chromosome 1, complete sequenceputative phage repressor1e-0652
NC_016612:3314846:332407433240743324481408Klebsiella oxytoca KCTC 1686 chromosome, complete genometranscriptional repressor DicA1e-0652
NC_015663:4522109:453774545377454538440696Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative phage repressor protein CI1e-0651.6
NC_013361:3287671:329508932950893295796708Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage repressor protein CI1e-0651.6
NC_010501:4379920:438793643879364388715780Pseudomonas putida W619, complete genomeputative phage repressor3e-0650.8
NC_011415:2153243:216098621609862161642657Escherichia coli SE11 chromosome, complete genomeputative phage repressor2e-0650.8
NC_009801:2193000:221593622159362216331396Escherichia coli E24377A, complete genomeputative transcriptional regulator DicA3e-0650.4
CU928145:1773642:179391017939101794317408Escherichia coli 55989 chromosome, complete genomeHTH-type transcriptional regulator dicA (Repressor protein of division inhibition gene dicA) of prophage3e-0650.4
NC_011748:1773642:179391017939101794317408Escherichia coli 55989, complete genometranscriptional repressor DicA3e-0650.4
NC_009778:1556222:156473615647361565341606Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-0650.1
NC_011601:1269500:127378112737811274188408Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometranscriptional repressor DicA5e-0650.1