Pre_GI: BLASTP Hits

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Query: NC_011094:593100:607074 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 607074, End: 608042, Length: 969

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011601:2614691:262321426232142624182969Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein5e-67254
NC_011740:2072173:2113118211311821141371020Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein from phage9e-66250
NC_009720:4087831:4090061409006140910711011Xanthobacter autotrophicus Py2, complete genomehypothetical protein5e-22105
NC_014306:3524980:3573311357331135743121002Erwinia billingiae Eb661, complete genomephage protein3e-1479.3
NC_015733:2720183:2754658275465827558391182Pseudomonas putida S16 chromosome, complete genomehypothetical protein7e-1374.7
NC_011283:4212000:422339242233924224351960Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein2e-1273.6