Pre_GI: BLASTP Hits

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Query: NC_011094:593100:603941 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 603941, End: 604384, Length: 444

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:1330066:133710713371071337901795Salmonella enterica subsp. enterica serovar Paratyphi C strainEaD8e-1785.9
NC_016845:1285435:129941712994171300091675Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,RelE family toxin-antitoxin system5e-1269.7
NC_013361:1558423:156413515641351564542408Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein4e-0650.1
NC_017328:303987:313288313288313737450Shigella flexneri 2002017 chromosome, complete genomehypothetical protein5e-0650.1