Pre_GI: BLASTP Hits

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Query: NC_011094:593100:602303 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 602303, End: 602980, Length: 678

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:2053991:205626120562612057124864Salmonella enterica subsp. enterica serovar Enteritidis strphage protein3e-26118
NC_017046:2756000:276381627638162764514699Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage protein4e-21101
NC_016856:2812905:281828528182852818983699Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SEaa14e-21101
NC_011080:2761403:276678327667832767481699Salmonella enterica subsp. enterica serovar Newport str. SL254,Eaa14e-21101
NC_013008:3231414:324675732467573247374618Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-1788.2
NC_011353:3276734:329188632918863292503618Escherichia coli O157:H7 str. EC4115 chromosome, complete genome4e-1788.2
NC_002655:1332961:133323813332381333861624Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by bacteriophage BP-933W4e-1788.2
AP010958:5361207:536761653676165367996381Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-1582.8
NC_013353:5361207:536761653676165367996381Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-1582.8
NC_013361:1558423:156185315618531562764912Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein8e-1477.4
NC_002655:2142587:215260821526082152865258Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933R1e-0859.7
NC_002695:1929215:193431219343121934557246Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-0857.4
NC_017328:303987:312617312617313291675Shigella flexneri 2002017 chromosome, complete genomeputative bacteriophage protein1e-0756.6
NC_009800:289000:293833293833294474642Escherichia coli HS, complete genomehypothetical protein8e-0650.4