Pre_GI: BLASTP Hits

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Query: NC_011094:2115750:2136974 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 2136974, End: 2137330, Length: 357

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:2009388:203000920300092030365357Salmonella enterica subsp. enterica serovar Enteritidis strphage tail tube protein1e-64244
NC_011205:2137696:215831521583152158671357Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tail tube protein1e-64244
NC_010102:1779707:180957718095771809933357Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-64244
NC_007946:2894793:291553329155332915889357Escherichia coli UTI89, complete genomehypothetical protein3e-52203
NC_009436:2776410:279721827972182797574357Enterobacter sp. 638, complete genomehypothetical protein1e-51201
NC_004337:2035945:205483820548382055194357Shigella flexneri 2a str. 301, complete genomehypothetical bacteriophage protein2e-51200
NC_004741:2009769:203017120301712030527357Shigella flexneri 2a str. 2457T, complete genomehypothetical bacteriophage protein2e-51200
NC_017328:2090679:210909721090972109453357Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-51200
NC_020260:1615135:164642816464281646784357Cronobacter sakazakii Sp291, complete genomebacteriophage tail tube protein4e-51199
NC_007712:1182518:120194112019411202309369Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein4e-44176
NC_002937:2933000:295837629583762958741366Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completetail tube protein, putative2e-0857.8