Pre_GI: BLASTP Hits

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Query: NC_011094:2115750:2136651 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 2136651, End: 2136977, Length: 327

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:2009388:202968620296862030012327Salmonella enterica subsp. enterica serovar Enteritidis strphage protein1e-46184
NC_011205:2137696:215799221579922158318327Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-46184
NC_010102:1779707:180925418092541809580327Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-46184
NC_004337:2035945:205450320545032054838336Shigella flexneri 2a str. 301, complete genomehypothetical bacteriophage protein2e-32137
NC_004741:2009769:202983620298362030171336Shigella flexneri 2a str. 2457T, complete genomehypothetical bacteriophage protein2e-32137
NC_017328:2090679:210876221087622109097336Shigella flexneri 2002017 chromosome, complete genomehypothetical protein2e-32137
NC_020260:1615135:164678116467811647107327Cronobacter sakazakii Sp291, complete genomeSb151e-27121
NC_007712:1182518:120162112016211201944324Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-21101
NC_007946:2894793:291526429152642915533270Escherichia coli UTI89, complete genomehypothetical protein1e-1375.1
NC_009436:2776410:279694927969492797218270Enterobacter sp. 638, complete genomebacteriophage protein1e-1168.2