Pre_GI: BLASTP Hits

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Query: NC_011094:2115750:2125692 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 2125692, End: 2126066, Length: 375

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:931055:942062942062942436375Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-68257
NC_011080:1166951:117526711752671175659393Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein2e-53207
NC_011147:1057259:106444610644461065432987Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-45181
NC_010102:1137247:114482111448211145396576Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-45180
NC_012125:1897611:190486119048611905436576Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein5e-45179
NC_006511:1063249:107109010710901071422333Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-45179
NC_006511:1654959:166891116689111669288378Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-41167
NC_004631:1182883:119448511944851194862378Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-41167
NC_003198:1771432:178627017862701786647378Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-41167
NC_011094:1282385:129398912939891294366378Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-41167
NC_011147:1650142:166409416640941664471378Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-41167
NC_016832:1182496:119345711934571193834378Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-41167
NC_010067:2304313:231476223147622315187426Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-41167
NC_015761:1181186:119403811940381194415378Salmonella bongori NCTC 12419, complete genomehypothetical protein1e-40164
NC_003454:677699:699629699629699982354Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeHypothetical cytosolic protein5e-1166.6
NC_016943:1956719:196039119603911960930540Blastococcus saxobsidens DD2, complete genomehypothetical protein2e-1064.7
NC_015677:3520524:352370235237023524121420Ramlibacter tataouinensis TTB310 chromosome, complete genomehypothetical protein2e-1064.3
NC_011283:2836000:289169128916912892242552Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein7e-0959.3
NC_009715:1829978:184269018426901843019330Campylobacter curvus 525.92 chromosome, complete genomehypothetical protein8e-0958.9
NC_017281:1253905:125518512551851255556372Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomehypothetical protein1e-0858.5
NC_003912:1345814:135000013500001350374375Campylobacter jejuni RM1221, complete genomehypothetical protein1e-0858.5
NC_000914:198000:2088772088772098871011Rhizobium sp. NGR234 plasmid pNGR234a, complete sequenceY4jT6e-0649.7