Pre_GI: BLASTP Hits

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Query: NC_011094:1282385:1297489 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 1297489, End: 1297701, Length: 213

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1277652:128899712889971289209213Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1cold shock-like protein2e-33140
NC_010102:1779707:179118217911821791394213Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-33140
NC_003197:1320861:133083213308321331044213Salmonella typhimurium LT2, complete genomecold shock-like protein2e-33140
NC_004631:1182883:119798611979861198198213Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative cold shock protein2e-33140
NC_003198:1771432:178293417829341783146213Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative cold shock protein2e-33140
NC_011294:1896168:190764319076431907855213Salmonella enterica subsp. enterica serovar Enteritidis strcold shock protein CspH2e-33140
NC_016810:1276340:128768512876851287897213Salmonella enterica subsp. enterica serovar Typhimurium strcold shock protein (CspH)2e-33140
NC_016856:1326503:134080713408071341019213Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Scold shock-like protein2e-33140
NC_016857:1276340:128768512876851287897213Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cold shock protein2e-33140
NC_016860:1317174:132851913285191328731213Salmonella enterica subsp. enterica serovar Typhimurium strcold shock protein2e-33140
NC_006905:1342474:136246613624661362678213Salmonella enterica subsp. enterica serovar Choleraesuis strcold shock protein-like protein2e-32137
NC_012125:2531817:254329325432932543505213Salmonella enterica subsp. enterica serovar Paratyphi C straincold shock protein2e-32137
NC_011147:1650142:166078316607831660995213Salmonella enterica subsp. enterica serovar Paratyphi A strcold shock protein5e-32135
NC_006511:1654959:166560016656001665812213Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative cold shock protein5e-32135
NC_015761:1181186:120922312092231209435213Salmonella bongori NCTC 12419, complete genomecold shock protein3e-30130
CP002516:2305659:232379423237942324006213Escherichia coli KO11, complete genomecold-shock DNA-binding domain protein8e-26115
CU928160:1668842:167987816798781680090213Escherichia coli IAI1 chromosome, complete genomecold shock protein; Qin prophage8e-26115
NC_011740:4520373:452586145258614526073213Escherichia fergusonii ATCC 35469, complete genomecold shock protein; Qin prophage8e-26115
AC_000091:1627049:164356916435691643781213Escherichia coli W3110 DNA, complete genomecold shock protein8e-26115
NC_011750:1565000:157106915710691571281213Escherichia coli IAI39 chromosome, complete genomecold shock protein; Qin prophage8e-26115
NC_011751:1859606:187177118717711871983213Escherichia coli UMN026 chromosome, complete genomecold shock protein; Qin prophage8e-26115
NC_010473:1712984:172950417295041729716213Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; cold shock protein8e-26115
NC_004431:3040953:305264930526493052861213Escherichia coli CFT073, complete genomeCold shock-like protein cspF8e-26115
CP002185:1770815:178185017818501782062213Escherichia coli W, complete genomeQin prophage; cold shock protein8e-26115
NC_000913:1625500:163987916398791640091213Escherichia coli K12, complete genomeQin prophage; cold shock protein8e-26115
NC_011741:1668842:167987816798781680090213Escherichia coli IAI1 chromosome, complete genomecold shock protein; Qin prophage8e-26115
NC_011742:4962008:496839449683944968606213Escherichia coli S88 chromosome, complete genomecold shock protein; Qin prophage8e-26115
NC_012759:1517500:153193815319381532150213Escherichia coli BW2952 chromosome, complete genomeQin prophage; cold shock protein8e-26115
NC_013361:2138716:215092921509292151141213Escherichia coli O26:H11 str. 11368 chromosome, complete genomecold shock protein8e-26115
NC_016902:2305659:232379423237942324006213Escherichia coli KO11FL chromosome, complete genomecold-shock protein8e-26115
NC_013941:5317424:532338853233885323600213Escherichia coli O55:H7 str. CB9615 chromosome, complete genomecold-shock protein2e-25114
NC_016612:477407:486391486391486603213Klebsiella oxytoca KCTC 1686 chromosome, complete genomecold shock-like protein CspF4e-25113
NC_015663:4488058:449704244970424497254213Enterobacter aerogenes KCTC 2190 chromosome, complete genomecold shock-like protein CspF1e-24111
NC_010468:2265423:228073722807372280937201Escherichia coli ATCC 8739, complete genomecold-shock DNA-binding domain protein1e-23108
NC_009436:2685910:269487826948782695090213Enterobacter sp. 638, complete genomecold-shock DNA-binding protein family protein4e-1373.6
NC_013421:2306000:231836723183672318579213Pectobacterium wasabiae WPP163, complete genomecold-shock DNA-binding domain protein2e-1271.2
NC_009832:4269804:427489642748964275108213Serratia proteamaculans 568, complete genomecold-shock DNA-binding domain protein2e-1270.9
NC_009381:1783886:181188818118881812100213Yersinia pestis Pestoides F chromosome, complete genomecold shock protein1e-1168.6
NC_016816:4232680:424978342497834249995213Pantoea ananatis LMG 5342, complete genomecold shock-like protein1e-1168.6
NC_015566:4350080:435925543592554359467213Serratia sp. AS12 chromosome, complete genomecold-shock DNA-binding domain-containing protein1e-1168.6
NC_013941:5317424:532390153239015324116216Escherichia coli O55:H7 str. CB9615 chromosome, complete genomecold-shock protein4e-1166.6
NC_011742:4962008:496890749689074969122216Escherichia coli S88 chromosome, complete genomecold shock protein; Qin prophage5e-1166.6
NC_004431:3040953:305213330521333052348216Escherichia coli CFT073, complete genomeCold shock-like protein cspB5e-1166.6
NC_011740:4520373:452637645263764526591216Escherichia fergusonii ATCC 35469, complete genomecold shock protein; Qin prophage5e-1166.6
AC_000091:1627049:164305316430531643268216Escherichia coli W3110 DNA, complete genomecold shock protein5e-1166.2
NC_010473:1712984:172898817289881729203216Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; cold shock protein5e-1166.2
NC_000913:1625500:163936316393631639578216Escherichia coli K12, complete genomeQin prophage; cold shock protein5e-1166.2
NC_011751:1859606:187125518712551871470216Escherichia coli UMN026 chromosome, complete genomecold shock protein; Qin prophage5e-1166.2
CU928160:1668842:167936216793621679577216Escherichia coli IAI1 chromosome, complete genomecold shock protein; Qin prophage5e-1166.2
CP002185:1770815:178133417813341781549216Escherichia coli W, complete genomeQin prophage; cold shock protein5e-1166.2
CP002516:2305659:232430723243072324522216Escherichia coli KO11, complete genomecold-shock DNA-binding domain protein5e-1166.2
NC_016902:2305659:232430723243072324522216Escherichia coli KO11FL chromosome, complete genomecold-shock protein5e-1166.2
NC_012759:1517500:153142215314221531637216Escherichia coli BW2952 chromosome, complete genomeQin prophage; cold shock protein5e-1166.2
NC_011741:1668842:167936216793621679577216Escherichia coli IAI1 chromosome, complete genomecold shock protein; Qin prophage5e-1166.2
NC_011750:1565000:157158215715821571797216Escherichia coli IAI39 chromosome, complete genomecold shock protein; Qin prophage5e-1166.2
NC_010468:2265423:228125022812502281465216Escherichia coli ATCC 8739, complete genomecold-shock DNA-binding domain protein5e-1166.2
NC_012912:242709:264877264877265089213Dickeya zeae Ech1591, complete genomecold-shock DNA-binding domain protein7e-1165.9
NC_014306:4901390:492860049286004928812213Erwinia billingiae Eb661, complete genomeCold-shock DNA-binding domain protein1e-1065.5
NC_013361:2138716:215041321504132150628216Escherichia coli O26:H11 str. 11368 chromosome, complete genomecold shock protein9e-1165.5
NC_006905:3780000:378721937872193787431213Salmonella enterica subsp. enterica serovar Choleraesuis strCold shock protein cspA (CSP-A)9e-1165.5
NC_004337:3590323:369111436911143691326213Shigella flexneri 2a str. 301, complete genomecold shock protein 7.4, transcriptional activator of hns9e-1165.5
NC_008258:3581583:360014336001433600355213Shigella flexneri 5 str. 8401, complete genomeCold shock protein cspA9e-1165.5
NC_011601:3951324:397393139739313974143213Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomemajor cold shock protein9e-1165.5
NC_009801:1756610:176239117623911762606216Escherichia coli E24377A, complete genomecold shock DNA-binding protein2e-1064.7
NC_013941:5317424:532716753271675327379213Escherichia coli O55:H7 str. CB9615 chromosome, complete genomecold-shock protein2e-1064.7
NC_004088:1291754:131314113131411313395255Yersinia pestis KIM, complete genomecold shock protein E2e-1064.7
NC_011750:1565000:157446915744691574681213Escherichia coli IAI39 chromosome, complete genomecold shock protein; Qin prophage2e-1064.3
NC_004431:3040953:304868330486833048898216Escherichia coli CFT073, complete genomeCold shock-like protein cspI2e-1064.3
NC_000913:1625500:163647916364791636691213Escherichia coli K12, complete genomeQin prophage; cold shock protein2e-1064.3
CP002185:1770815:177845017784501778662213Escherichia coli W, complete genomeQin prophage; cold shock protein2e-1064.3
CP002516:2305659:232719423271942327406213Escherichia coli KO11, complete genomecold-shock DNA-binding domain protein2e-1064.3
CU928160:1668842:167647716764771676689213Escherichia coli IAI1 chromosome, complete genomecold shock protein; Qin prophage2e-1064.3
NC_011740:4520373:452982845298284530040213Escherichia fergusonii ATCC 35469, complete genomecold shock protein; Qin prophage2e-1064.3
NC_011751:1859606:186837018683701868582213Escherichia coli UMN026 chromosome, complete genomecold shock protein; Qin prophage2e-1064.3
AC_000091:1627049:164016916401691640381213Escherichia coli W3110 DNA, complete genomecold shock protein2e-1064.3
NC_009800:1657550:166751416675141667729216Escherichia coli HS, complete genomecold shock DNA-binding protein2e-1064.3
NC_010468:2265423:228413722841372284349213Escherichia coli ATCC 8739, complete genomecold-shock DNA-binding domain protein2e-1064.3
NC_003143:2895617:291705429170542917263210Yersinia pestis CO92, complete genomecold shock protein E2e-1064.3
NC_008150:2785830:279363527936352793844210Yersinia pestis Antiqua, complete genomeputative cold shock protein2e-1064.3
NC_016902:2305659:232719423271942327406213Escherichia coli KO11FL chromosome, complete genomecold-shock protein2e-1064.3
NC_013361:2138716:214752921475292147741213Escherichia coli O26:H11 str. 11368 chromosome, complete genomecold shock protein2e-1064.3
NC_012967:1593101:161064816106481610860213Escherichia coli B str. REL606 chromosome, complete genomecold shock protein2e-1064.3
NC_012759:1517500:152853815285381528750213Escherichia coli BW2952 chromosome, complete genomeQin prophage; cold shock protein2e-1064.3
NC_011742:4962008:497235949723594972571213Escherichia coli S88 chromosome, complete genomecold shock protein; Qin prophage2e-1064.3
NC_011741:1668842:167647716764771676689213Escherichia coli IAI1 chromosome, complete genomecold shock protein; Qin prophage2e-1064.3
NC_010473:1712984:172610417261041726316213Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; cold shock protein2e-1064.3
NC_013282:1842412:186615718661571866369213Cronobacter turicensis, complete genomeCold shock-like protein cspB4e-1063.5
NC_005810:1976000:198003719800371980249213Yersinia pestis biovar Microtus str. 91001, complete genomecold shock protein5e-1063.2
NC_003143:1880000:188377318837731883985213Yersinia pestis CO92, complete genomecold shock protein5e-1063.2
NC_009381:2009842:202597220259722026184213Yersinia pestis Pestoides F chromosome, complete genomecold shock protein5e-1063.2
NC_017265:1715035:172019317201931720405213Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,cold shock protein5e-1063.2
NC_016832:948029:981128981128981340213Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cold shock-like protein cspJ7e-1062.8
NC_004631:948054:983453983453983665213Salmonella enterica subsp. enterica serovar Typhi Ty2, completecold shock protein7e-1062.8
NC_015224:1440283:145498914549891455198210Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,cold shock protein CspE1e-0962
NC_008800:3279468:328277832827783282987210Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,cold shock protein CspE1e-0962
NC_012751:1190206:119321011932101193428219Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeRNA chaperone, transcription antiterminator, affects expression of rpoS and uspA1e-0962
NC_011205:1227373:123964812396481239860213Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853cold-shock protein1e-0962
NC_011274:1129686:115301911530191153231213Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91cold shock protein1e-0962
NC_016810:2027311:203679320367932037005213Salmonella enterica subsp. enterica serovar Typhimurium strcold shock protein1e-0962
NC_016831:1865681:187193418719341872146213Salmonella enterica subsp. enterica serovar Gallinarum/pullorumcold shock protein1e-0962
NC_016856:2085283:209063020906302090842213Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cold-shock protein1e-0962
NC_016857:2027311:203679320367932037005213Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cold-shock protein1e-0962
NC_016863:2029340:203882220388222039034213Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cold-shock protein1e-0962
NC_017046:2026672:203615420361542036366213Salmonella enterica subsp. enterica serovar Typhimurium str. 798cold shock protein1e-0962
NC_020418:2084937:209106620910662091278213Morganella morganii subsp. morganii KT, complete genomecold shock protein E1e-0961.6
NC_015663:4488058:449753344975334497751219Enterobacter aerogenes KCTC 2190 chromosome, complete genomecold-shock' DNA-binding domain-containing protein2e-0961.2
NC_020064:1150982:116604211660421166251210Serratia marcescens FGI94, complete genomecold shock protein2e-0961.2
NC_011149:1110642:112583411258341126046213Salmonella enterica subsp. enterica serovar Agona str. SL483,4e-0960.1
NC_011283:4966471:499118349911834991401219Klebsiella pneumoniae 342 chromosome, complete genomecold-shock DNA-binding protein6e-0959.7
NC_016612:477407:486882486882487100219Klebsiella oxytoca KCTC 1686 chromosome, complete genome'cold-shock' DNA-binding domain protein7e-0959.3
NC_008513:343540:349218349218349427210Buchnera aphidicola str. Cc (Cinara cedri), complete genomeCspE1e-0858.5
NC_009436:2685910:269332626933262693544219Enterobacter sp. 638, complete genomecold-shock DNA-binding protein family protein1e-0858.5
NC_004545:499709:507389507389507598210Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genomecold shock protein E2e-0858.2
NC_017047:3212000:321806732180673218276210Rahnella aquatilis HX2 chromosome, complete genomecold shock-like protein CspC5e-0856.6
NC_016818:3148000:315400131540013154210210Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completecold shock protein5e-0856.6
NC_008800:1942000:195654119565411956750210Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,cold shock-like protein CspC5e-0856.6
NC_015061:3147691:315346531534653153674210Rahnella sp. Y9602 chromosome, complete genomecold-shock DNA-binding domain protein5e-0856.6
NC_003143:1973867:198948919894891989698210Yersinia pestis CO92, complete genomecold shock protein5e-0856.6
NC_020064:2779864:278063427806342780843210Serratia marcescens FGI94, complete genomecold shock protein5e-0856.6
NC_008149:2652825:266034426603442660553210Yersinia pestis Nepal516, complete genomecold shock protein5e-0856.6
NC_012880:2399205:240646524064652406674210Dickeya dadantii Ech703, complete genomecold-shock DNA-binding domain protein1e-0755.5
NC_014335:4848389:486162248616224861825204Bacillus cereus biovar anthracis str. CI chromosome, completecold shock protein1e-0755.1
NC_003997:4876415:491200449120044912201198Bacillus anthracis str. Ames, complete genomecold shock protein CspC2e-0754.3
NC_007530:4877500:491213049121304912327198Bacillus anthracis str. 'Ames Ancestor', complete genomecold shock protein cspc2e-0754.3
NC_011772:5021404:505323450532345053431198Bacillus cereus G9842, complete genomecold shock protein CspC2e-0754.3
NC_011725:5075285:510678951067895106986198Bacillus cereus B4264 chromosome, complete genomecold shock protein CspC2e-0754.3
NC_012581:4882525:491445349144534914650198Bacillus anthracis str. CDC 684 chromosome, complete genomecold shock protein CspC2e-0754.3
NC_005945:4898841:491334149133414913544204Bacillus anthracis str. Sterne, complete genomecold shock protein CspC2e-0754.3
NC_006274:4940922:497311349731134973316204Bacillus cereus E33L, complete genomecold shock protein2e-0754.3
NC_005957:4904000:491678949167894916992204Bacillus thuringiensis serovar konkukian str. 97-27, completecold shock protein2e-0754.3
NC_012472:4908245:493871749387174938920204Bacillus cereus 03BB102, complete genomecold shock protein CspC2e-0754.3
NC_010184:4909183:494509349450934945296204Bacillus weihenstephanensis KBAB4, complete genomecold-shock DNA-binding domain protein2e-0754.3
NC_008600:4898000:492845149284514928654204Bacillus thuringiensis str. Al Hakam, complete genomecold shock protein2e-0754.3
NC_011773:4940921:497332349733234973526204Bacillus cereus AH820 chromosome, complete genomecold shock protein CspC2e-0754.3
NC_012659:4877410:491203049120304912233204Bacillus anthracis str. A0248, complete genomecold shock protein CspC2e-0754.3
NC_014171:4959248:499635749963574996560204Bacillus thuringiensis BMB171 chromosome, complete genomecold shock protein2e-0754.3
NC_016779:4864056:489345048934504893653204Bacillus cereus F837/76 chromosome, complete genomeCold shock protein CspC2e-0754.3
NC_017208:5143500:515639251563925156595204Bacillus thuringiensis serovar chinensis CT-43 chromosome, completecold shock protein2e-0754.3
NC_013061:2247191:224812622481262248332207Pedobacter heparinus DSM 2366, complete genomeCold-shock protein DNA-binding3e-0753.9
NC_017200:4995075:503190950319095032112204Bacillus thuringiensis serovar finitimus YBT-020 chromosome,cold shock protein CspC4e-0753.5
NC_016771:4882886:489040148904014890604204Bacillus cereus NC7401, complete genomecold shock protein CspA4e-0753.5
NC_011969:4841358:487288948728894873092204Bacillus cereus Q1 chromosome, complete genomecold shock protein cspc4e-0753.5
NC_011658:4925346:493807849380784938281204Bacillus cereus AH187 chromosome, complete genomecold shock protein CspC4e-0753.5
NC_003909:4854379:488506148850614885264204Bacillus cereus ATCC 10987, complete genomecold shock protein CspC4e-0753.5
NC_015723:2116090:212798221279822128185204Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein8e-0752.4
NC_008700:3514745:352715335271533527365213Shewanella amazonensis SB2B, complete genomeputative cold-shock DNA-binding domain protein9e-0752.4