Pre_GI: BLASTN Hits

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Query: NC_011083:1408202 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,

Start: 1408202, End: 1426986, Length: 18785

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a multidrug resistant strain. Salmonella enterica subsp. enterica serovar Heidelberg is one of the more common serovars causing disease in the USA. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003197:1401603*1401603142524123639Salmonella typhimurium LT2, complete genome023760BLASTN svgBLASTP svg
NC_010102:17031721703172172512221951Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,023690BLASTN svgBLASTP svg
NC_004631:1271500*1271500129345821959Salmonella enterica subsp. enterica serovar Typhi Ty2, complete023580BLASTN svgBLASTP svg
NC_003198:1693623*1693623171542721805Salmonella enterica subsp. enterica serovar Typhi str. CT18,023580BLASTN svgBLASTP svg
NC_006511:1579776*1579776160172721952Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC023540BLASTN svgBLASTP svg
NC_010658:1772994*1772994179509922106Shigella boydii CDC 3083-94, complete genome04375BLASTN svgBLASTP svg
NC_020063:2011019*2011019203659925581Enterobacteriaceae bacterium strain FGI 57, complete genome03985BLASTN svgBLASTP svg
NC_013850:2103469*2103469214696843500Klebsiella variicola At-22 chromosome, complete genome03733BLASTN svgBLASTP svg
NC_007613:1353500*1353500137891925420Shigella boydii Sb227, complete genome03330BLASTN svgBLASTP svg
NC_014500:2589089*2589089260812419036Dickeya dadantii 3937 chromosome, complete genome01863BLASTN svgBLASTP svg
NC_012912:2216749*2216749224082124073Dickeya zeae Ech1591, complete genome01713BLASTN svgBLASTP svg
NC_012880:2425330*2425330245003424705Dickeya dadantii Ech703, complete genome01013BLASTN svgBLASTP svg
NC_014228:1712339*1712339175523642898Xenorhabdus nematophila ATCC 19061, complete genome1e-131478BLASTN svgBLASTP svg
NC_012779:1820244*1820244184249822255Edwardsiella ictaluri 93-146, complete genome2e-111410BLASTN svgBLASTP svg
NC_005126:31217223121722318069058969Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-110406BLASTN svgBLASTP svg
NC_002506:298868*29886831909920232Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete2e-52214BLASTN svgBLASTP svg
NC_002516:3079850*3079850310675226903Pseudomonas aeruginosa PAO1, complete genome2e-37165BLASTN svgBLASTP svg
NC_008463:2467219*2467219250339236174Pseudomonas aeruginosa UCBPP-PA14, complete genome1e-35159BLASTN svgBLASTP svg
NC_009434:2577717*2577717259643418718Pseudomonas stutzeri A1501, complete genome3e-30141BLASTN svgBLASTP svg
NC_015740:2407500*2407500244682739328Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-26129BLASTN svgBLASTP svg
NC_021150:2026496*2026496204664620151Azotobacter vinelandii CA6, complete genome2e-25125BLASTN svgBLASTP svg
NC_012560:2026483*2026483204663320151Azotobacter vinelandii DJ, complete genome2e-25125BLASTN svgBLASTP svg
NC_012880:2399205*2399205242050221298Dickeya dadantii Ech703, complete genome7e-25123BLASTN svgBLASTP svg
NC_011770:2499432*2499432255697257541Pseudomonas aeruginosa LESB58, complete genome4e-23117BLASTN svgBLASTP svg
NC_020063:2565605*2565605259927233668Enterobacteriaceae bacterium strain FGI 57, complete genome1e-20109BLASTN svgBLASTP svg
NC_015410:3209954*3209954323120121248Pseudomonas mendocina NK-01 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_007947:2140000*2140000218514745148Methylobacillus flagellatus KT, complete genome4e-20107BLASTN svgBLASTP svg
NC_009512:3618055*3618055363859920545Pseudomonas putida F1, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_003112:744476*74447676938624911Neisseria meningitidis MC58, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_013166:1841446*1841446185969318248Kangiella koreensis DSM 16069, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_002947:2809591*2809591283264923059Pseudomonas putida KT2440, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_016002:1326500*1326500135490028401Pseudogulbenkiania sp. NH8B, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_012660:4558122*4558122459234134220Pseudomonas fluorescens SBW25 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_018691:3525430*3525430358162756198Alcanivorax dieselolei B5 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_018868:569423*56942361904449622Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_003902:2903493*2903493292609922607Xanthomonas campestris pv. campestris str. ATCC 33913, complete2e-0971.9BLASTN svgBLASTP svg
NC_004129:2328491*2328491236123032740Pseudomonas fluorescens Pf-5, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_004757:1021355*1021355105233830984Nitrosomonas europaea ATCC 19718, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_007086:1988000*1988000201548327484Xanthomonas campestris pv. campestris str. 8004, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_013959:1723037*1723037174709924063Sideroxydans lithotrophicus ES-1 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015500:987641*987641101630028660Treponema brennaborense DSM 12168 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_008702:1153344*1153344117844425101Azoarcus sp. BH72, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_007492:2203220*2203220222417320954Pseudomonas fluorescens PfO-1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_012968:1731976*1731976175455122576Methylotenera mobilis JLW8, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_011772:4487378*4487378452232234945Bacillus cereus G9842, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_008781:2981868*2981868300465822791Polaromonas naphthalenivorans CJ2, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009049:2131017*2131017216459933583Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequence9e-0660BLASTN svgBLASTP svg